KEGG   Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101975941
Entry
101975941         CDS       T10664                                 
Symbol
Ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
iti  Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03420  Nucleotide excision repair
iti04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:iti00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    101975941 (Ercc8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    101975941 (Ercc8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:iti04121]
    101975941 (Ercc8)
   03400 DNA repair and recombination proteins [BR:iti03400]
    101975941 (Ercc8)
Ubiquitin system [BR:iti04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     101975941 (Ercc8)
DNA repair and recombination proteins [BR:iti03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      101975941 (Ercc8)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR75_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EIPR1 WDR55 Beta-prop_WDR90_POC16_2nd WD_LRWD1 Beta-prop_EML ANAPC4_WD40 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_SPT8 Beta-prop_RIG_1st Beta-prop_WDR35_TULP_N Beta-prop_Nup120_160 Beta-prop_WDR11_1st Cytochrom_D1 Beta-prop_HPS5
Other DBs
NCBI-GeneID: 101975941
NCBI-ProteinID: XP_005319650
UniProt: I3M5V3
LinkDB
Position
Unknown
AA seq 396 aa
MLGFLSARQAGLEDPMRFQRTESTRRVLGLELNKDRDIERIHGSGVNTLDIEPVEGRYML
SGGSDGVIVLYDLENSSRQLYYTCKAVCSIGRNHPDVHKYSVETVQWYPHDTGMFTSSSF
DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVATKHCLVAVGTRGPKVKLCDLKSGSCSH
ILQGHRQEILAVSWSPRYEYILATASADSRVKLWDVRRASGCLINLDQHNGKKSQAAESA
NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNDSRKGLKFTVS
CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKNVDCCVFQSNFQELYSGSRDCNILA
WVPSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEG
NT seq 1191 nt   +upstreamnt  +downstreamnt
atgctgggctttttgtccgcgcgacaagcgggtttggaagaccctatgcgcttccagaga
acggagtccacacggagggttttgggactggagttaaacaaagacagagatattgaaaga
atccatggaagtggagttaacacccttgacattgaacctgttgaagggagatacatgtta
tcaggtggttcagatggtgtgattgtactttatgaccttgagaactccagcagacaactt
tattacacatgtaaagcagtatgttccatcggcagaaatcatcctgatgttcacaagtac
agtgtggagactgttcagtggtatcctcatgacactggaatgttcacatcgagctcattt
gataaaactctgaaagtatgggacacaaatacattacaaactgcagatgtatttaatttt
gaagaaacagtttatagtcatcatatgtctccagttgcgaccaagcactgtttggtagca
gttggtactagaggacccaaagtaaaactttgtgacttaaagtctggatcctgttctcat
attctacagggtcacagacaggaaatcttggcagtttcctggtcaccacgttatgagtat
atcttggctactgcaagtgctgacagtagagtaaaactatgggatgtgaggagagcttca
ggatgtttgattaatcttgatcagcataatgggaaaaagtcacaagctgctgaatcagca
aacactgctcataacgggaaagttaatggcttatgttttacaagtgatgggcttcacctc
ctcactgttggtacagataatcgaatgaggctctggaatagttccaatggagaaaacaca
ctagtgaattatggaaaagtttgtaatgatagcagaaaaggattgaaattcactgtctcc
tgcggctgcagttcagaatttgtttttgtgccatatggtagcaccattgctgtttataca
gtttactcaggagaacagataactatgcttaagggacattataaaaatgttgactgctgt
gtatttcaatctaatttccaggaactttatagtggtagcagagactgcaatattcttgct
tgggtaccatccttatatgaaccagttcccgatgatgatgagactacaaccaaatcacag
ttaaatccagcttttgaagatgcctggagcagcagtgatgaggaaggatga

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