Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101976004
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Entry
101976004 CDS
T10664
Symbol
Abca2
Name
(RefSeq) ATP-binding cassette sub-family A member 2
KO
K05642
ATP-binding cassette, subfamily A (ABC1), member 2
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti02010
ABC transporters
iti04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
101976004 (Abca2)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
101976004 (Abca2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
iti02000
]
101976004 (Abca2)
Transporters [BR:
iti02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
101976004 (Abca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
DUF4162
Motif
Other DBs
NCBI-GeneID:
101976004
NCBI-ProteinID:
XP_040139776
LinkDB
All DBs
Position
Unknown
AA seq
2435 aa
AA seq
DB search
MGIRPPAGNLTRKPGPWGSQWVLAFEIFIPLVLFFILLGLRQKKPTISVKEVSFYTASPL
TSAGILPVMQSLCPDGQRDEFGFLQYANSTVTQLLERLNRVVEEGNLFDPARPSLGSELE
ALRHDLEALSSGPGTWESHLDRPTVSSFSLDSVARDPRELWHFLMQNLSLPNSTAQALLA
ARVDPPKVYHLLSGPLSALHGESGFPRDQVPWSSPGSNPLLRMEELLLAPAFLEQLTCSP
GSGELGQILTMPEGQQTALQGYRDTICSGKAAARAQRFSWLAAELRNQLDLAKISQQLGL
DAPNSSDSQQQAPSPRRLQALLGDLLDAQKVLQDVDVLSALALLLPQGACAGRAPVPSAG
GPSGAANGTGVGAGAVSNNTAEEGPPAAAAPASTDTLQGQCSAFVQLWAGLQPILCGNNR
TIEPEALRRGNMSSLGFTSKEQRNLGLLVHLMTSNPKILYAPAGSEADRVILKANETFAF
VGNVTHYAQVWLNISAEIRSFLEQGGLQQHLHWLRQYVEELRQRPEALNLSLEDLPPALR
QDNFSLPNGTALLQQLDTIDNAACGWIQFMSKVSVDIFKGFPDEESIVNYTLNQAYQDNV
TVFASVIFQTRKDGSLPPHVHYKIRQNSSFTEKTNEIRRAYWRPGPNTGGRFYFLYGFVW
IQDMMERAIINTFVGHDVVEPGNYVQMFPYPCYTRDDFLFVIEHMMPLCMVISWVYSVAM
TIQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITGFLQLSISVTALTAILKYGQVLMHSH
VLIIWLFLAVYAVATIMFCFLVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVAHDK
ITAFEKCIASLMSTTAFGLGSKYFALYEVAGVGIQWHTFSQSPVEGDDFNLLLAVTMLMV
DAVVYGVLTWYIEAVHPGMYGLPRPWYFPLQKSYWLGSGRTEAWEWSWPWTRAPRLSIME
EDQACAMESRRFEETRGMEEEPTHLPLVVCVDKLTKVYKNDKKLALNKLSLNLYENQVVS
FLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTV
EEHLWFYSRLKSMAQEEIHKEMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGS
RAIILDEPTAGVDPYARRAIWDLILKYKPGRTILLSTHHMDEADLLGDRIAIISHGKLKC
CGSPLFLKGAYGDGYRLTLVKRPAEPGAPQEPGLAPSPPGRAPLSSCSEPQVSQFIRKHV
ASCLLVSDTSTELSYILPSEAAKKGAFERLFQHLEHSLDALHLSSFGLMDTTLEEVFLKV
SEEDQSLENSEADVKESRKDVLPGPEGLLSREGQPGNLAQCSELAQSQVSLQSVSSVGSA
RGDEGAGYADVCGDYRPLLDNLQDPDNISLQEAEAEALIRVGQGSRKLEGWWLKVRQFHG
LLVKRFHCARRNSKALCSQILLPALFVCVAMTVALSVPEIGDLPPLVLSPSQYHNYTQPR
GNFIPYANEERREYRLRLSPDASPQQLVGTFRLPSGVGATCVLKSPANGSLGPTLNLSSG
ESRQLAARFFDSMCLESFTQGLPLSNFVPPPPSPAPSDSPVSLDEDPLQAWNTSLPPTVG
PETWTSAPSLPRLVREPVRCTCSAQGTGFSCPSSVGGHPPQMRVVTGDILTDITGHNVSE
YLLFTSDRFRLHRYGAITFGNVQKSIPASFGARAPPMVRKIAVRRVAQVLYNNKGYHSMP
TYLNSLNNAILRANLPKSKGSPAAYGITVTNHPMNRTSASLSLDYLLQGTDVVIAIFIIV
AMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPVIYWLSNYVWDMLNYLVPATCCILILFV
FDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSSAYVFLIVINLFIGITATV
ATFLLQLFEHDKDLKVVNSYLKSCFLIFPNYNLGHGLMEMAYNEYINEYYAKIGQLDKMK
SPFEWDIVTRGLVAMTVEGFVGFLLTIMCQYNFLRQPQRMPVSTKPVEDDVDVASERQRV
LRGDADNDMVKIENLTKVYKSRKIGRILAVDRLCLGVRPGECFGLLGVNGAGKTSTFKML
TGDESTTGGEAFVNGHSVLKELLQVQQSLGYCPQFDALFDELTAREHLQLYTRLRGIPWK
DEARVVKWALEKLELTKYADKPAGTYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKA
RRFLWNLILDLIKTGRSVVLTSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGY
MITVRTKSSQNVKDVVRFFNRNFPEAVLKERHHTKVQYQLKSEHVSLAQVFSKMEQVVGV
LGIEDYSVSQTTLDNVFVNFAKKQSDNLEQQETEPPSALQSPLGRLLSLLRPRPAPTELR
ALVTDEPEDLDTEDEGLISFEEERAQLSFNTDTLC
NT seq
7308 nt
NT seq
+upstream
nt +downstream
nt
atgggcatccggcccccagctggaaacctgacaaggaaacctgggccctggggttctcag
tgggtcctggccttcgagatcttcatcccactcgtcctcttcttcatcctgctggggctg
cggcagaagaagcccaccatctcagtgaaggaagtctccttctacacagcgtctcccctg
acttctgctggcatcctgcctgttatgcagtcgctgtgcccagatggccagcgggatgag
tttggcttcctacagtatgccaactccacggtcacgcagctgctggagcgcctcaaccgc
gtggtggaggaaggcaacctgttcgacccagcacggcccagcctgggctcggagcttgag
gccctgcgccatgatctggaggccctaagctcaggtccaggcacctgggagagccacttg
gatagacctacagtgtcctccttctctctggactcggtggccagggacccacgggaactc
tggcatttcctgatgcagaacctctcgctgcccaacagcacggcccaggccctcctggct
gcccgtgtggacccgcctaaggtctatcacctgctttctggccctttgtctgccctgcat
ggggagtcaggcttccctagggatcaggtgccttggagcagcccgggaagcaatccccta
ctgcggatggaggagctgctgctggcccctgccttcctggagcaactcacatgttcccca
ggctctggggagctgggccagatcctcaccatgcctgagggtcagcagacagctcttcag
ggctaccgggacactatctgcagtgggaaggctgcagctcgtgcccagcgctttagttgg
ttggctgctgagctccggaaccagctggacctggccaagatctcccagcagctgggcctg
gatgcccccaacagctccgactcccagcagcaggcaccatcccctcggaggctgcaggca
cttttaggggatctgctggatgcccagaaggttctgcaggacgtggatgtcctgtcagcc
ctggctctgctgctgccccagggtgcctgcgccggccgggccccagtgccttcagctggt
ggcccgagtggtgcggccaatggtactggagtgggtgcaggtgcagtctccaacaacaca
gcagaggaaggccccccggcagcggcagccccggcctccacagacacactgcagggccag
tgctccgcctttgtgcagctctgggcaggtctgcagcccatcctgtgtgggaacaaccgc
accattgagccagaggcgctgcggaggggcaacatgagctccctgggcttcacaagcaag
gagcagcggaacttgggacttcttgtgcacctcatgaccagcaaccccaaaatcctatat
gcacccgcaggctccgaggctgaccgtgtcatcctcaaggccaacgagactttcgccttt
gtgggcaacgtgactcactacgcccaggtctggctcaacatctctgcagagatccgcagc
ttcttggagcagggtggtctgcagcagcatctgcactggctacggcagtatgtggaagag
ctgcggcagcgccccgaagcactgaacctgtcgttggaggatctgccaccagccctgcgc
caggacaacttctcgctgccaaacggcacagccctcctacagcagctggacacgattgac
aatgcagcttgcggctggatccagttcatgtccaaggtgagcgtggacatcttcaagggc
tttccggacgaggagagcatagtcaactacacgctcaaccaggcctaccaggacaatgtc
accgtgtttgccagtgtgatcttccagacgcgcaaggatggctctctgccgccgcacgtg
cactataagatccgccagaactccagtttcaccgagaagaccaacgagatccgccgcgcc
tactggcggcccgggcccaacacgggcggccgcttctacttcctctacggcttcgtctgg
atccaggacatgatggagcgcgccatcatcaacaccttcgtggggcacgatgtggtggag
cccggcaactacgtgcagatgttcccctacccctgctacacgcgcgacgacttcctgttt
gtcattgagcatatgatgcctctctgcatggtgatctcctgggtgtactccgtggccatg
accatccagcacatagtggctgagaaggagcaccgcctcaaggaggtgatgaagaccatg
ggcctcaacaacgcggtgcactgggtggcctggttcatcactggcttcctgcagctgtcc
atctctgtgacggcactcactgccatcctcaagtacggccaggtgctcatgcacagccat
gtgctcatcatctggctcttcctggccgtgtatgccgtggccaccatcatgttctgcttc
ctggtgtcggtgctgtactccaaggccaagctggcctcagcctgtggtggcatcatctac
ttcctaagctacgtgccctacatgtatgtggctatccgcgaggaggtggcccacgacaag
atcactgcctttgaaaagtgcattgcgtccctgatgtccaccacagcctttggcctgggc
tccaagtactttgccctgtatgaggtggcaggtgtgggcatccagtggcacacattcagc
cagtctccagtggaaggtgatgacttcaacctgctccttgctgtcaccatgctgatggtg
gatgcagttgtgtatggtgtactcacctggtacattgaggctgtgcacccaggcatgtat
gggctgccccggccctggtacttcccactgcagaagtcctactggctaggcagtgggcgg
acagaggcctgggagtggagctggccttggacacgtgccccccgcctcagcatcatggag
gaggaccaggcctgtgccatggagagccggcgctttgaggagactcgtggaatggaagaa
gagcccacgcacctgcccctggttgtgtgtgtggacaagctcaccaaggtctataagaac
gacaagaagctggccttgaacaagctgagcctcaacctctacgagaaccaggtcgtctcc
ttcctgggccacaacggggcaggcaagaccaccaccatgtccatcctgactggcttgttc
ccaccaacctctggctcggccaccatctatgggcatgacatccgcacggagatggacgaa
atccgcaagaacctgggcatgtgtccccagcacaatgtgctctttgaccgcctcacggtg
gaagagcacctctggttctactcacggctcaagagcatggcgcaggaagagatccacaag
gagatggacaagatgatcgaggacctggagctctccaataaacggcactcactggtgcag
acactgtcgggcggcatgaaacgcaagctctctgtggccatagcctttgtgggcggctcc
cgcgccatcatcctggatgagcccactgcgggtgtggacccttacgctcgtcgggccatc
tgggacctcattctgaagtataagccgggccgcaccatcctgctgtccacccaccacatg
gatgaggctgacctgctgggggaccgcatcgccatcatctcccacgggaagctcaagtgc
tgtggttcccccctcttcctcaagggcgcctacggcgatgggtaccgcctcacactggtc
aagcggcctgctgagccgggggcaccccaagagccaggtctggcacccagtcccccaggc
cgggcacccctgagcagctgttcggagccccaggtgtcccagttcatccgcaagcacgtg
gcctcctgcctcctggtctccgacaccagcactgagctctcctacatcctgcccagtgag
gctgccaagaagggggccttcgagcgcctcttccagcacctggagcacagtctggatgca
ctgcacttgagcagctttgggctgatggacaccaccttggaggaggtattcctcaaggtg
tcggaggaggaccagtcactggagaacagcgaggctgatgtgaaggagtccaggaaggat
gtgcttcctgggccagagggcctattgtccagggagggtcagcctggcaacctggcccag
tgctcagagctggcccagtcacaggtgtcactgcagtctgtgtcctcggtgggctctgcc
cgtggtgatgagggagccggctatgctgatgtctgtggcgactaccgcccgctcttggac
aacctgcaggacccagacaacatcagcctgcaagaggcagaagcggaggccctcatacgg
gtgggccagggcagccgcaagctggaaggctggtggctgaaggtgcggcagttccacggg
ctcctggtcaagcgcttccactgtgcccgccgcaactccaaagctctctgctcgcagatc
ctgctgcctgccctcttcgtctgtgtggccatgactgtggccctctctgtccctgagatc
ggtgacctgcccccgctggtcctgtcgccctcccagtaccacaactatacccagccccga
ggcaacttcatcccctatgccaacgaggagcgcagggagtaccggctgcgactgtcacca
gatgccagcccccagcagctggtaggcacgttccggctgccctccggagtgggtgccacc
tgcgtgctcaagtctcccgccaacggctcgctggggcccacactgaacctgagcagcggg
gagtcccgccagctggccgcgcggttcttcgacagcatgtgcctggagtccttcacacag
gggctgcccctgtccaacttcgtgccacccccaccctcacctgccccgtctgactccccc
gtgtccctggatgaggacccgctccaggcctggaacacctccctgccacccactgtagga
ccagagacgtggacatccgcaccctccctgccacgcctggtgcgggagccggtccgctgc
acttgctctgcacagggcaccggcttctcctgccccagcagcgtgggcgggcacccgccc
cagatgcgcgtggtcacaggagacatcctaacagacatcacaggccacaacgtctccgag
tacctgctctttacctctgaccgcttccggctgcaccggtatggggccatcacctttggc
aatgtccagaagtccatcccagcctcatttggtgcccgggccccgcccatggtgcggaag
attgcagtgcgcagggtggcccaggtgctctacaacaacaagggctaccacagcatgccc
acctacctgaacagcctgaacaatgccatcctccgcgccaacctgcccaagagcaagggc
agccccgcggcctacggcatcactgtcaccaaccaccccatgaacaggaccagtgccagc
ctctccctggattacctgctgcagggtacagatgtggtcatcgccatcttcatcattgtg
gccatgtcgttcgtgccggccagctttgtggtcttcctcgtggctgagaagtccaccaaa
gccaagcacctgcagttcgtcagtggctgcaaccccgtcatctactggttgtccaactac
gtgtgggacatgctcaactacctggtgccagccacctgctgcatcctcatcctgtttgtg
ttcgacctgccggcctacacgtcccccaccaacttccctgcggtgctctccctgttcctg
ctctatgggtggtccatcacacccatcatgtacccggcctccttctggttcgaggtcccc
agctcagcctacgtgttcctcatcgtcatcaacctcttcattggcatcacggccactgtg
gccaccttcttgctgcagctttttgagcatgacaaggacctgaaggtggtcaacagttac
ctgaaaagctgcttcctcatcttccccaactacaacctgggccacgggctcatggagatg
gcctacaacgagtacatcaatgaatactacgccaagatcggccagctggacaagatgaag
tccccatttgagtgggacattgtcacgcgtgggctggtggccatgacagtcgaaggcttt
gtgggcttccttctcaccatcatgtgccagtacaacttcctgagacagccacaacgcatg
ccagtgtccaccaaacctgtcgaggacgacgtggatgtggccagtgagcggcagcgagtg
cttcgtggggatgctgacaatgacatggtcaagattgagaacctgaccaaggtgtacaag
tcccggaagattggccgcatcctggctgtggaccgtctgtgcctgggcgtgcgtcctggc
gagtgctttggcctcctgggtgtcaacggagcgggcaagaccagcaccttcaagatgctg
actggtgacgagagcaccacagggggcgaggcctttgtgaacgggcacagcgtgctcaag
gagctgctccaggtccagcagagcctcggctactgcccgcagtttgacgccctgttcgac
gagctcacagcccgtgagcatctgcagttgtacacgcggctgcgcggcataccctggaag
gatgaggcgcgggtagtgaagtgggctctggagaagctagagctgaccaagtacgcggac
aagccggctggcacctacagcggcggcaacaaacggaagctatccactgccattgcgctc
atcgggtaccctgccttcatcttcctggatgagcccaccacgggcatggaccccaaggcc
cggcgcttcctctggaacctcattctcgacctcatcaagacaggccgttccgtggtcttg
acgtctcacagcatggaggagtgcgaggccctgtgcacgcgcctggccatcatggtgaat
ggacgcctgcgctgtctgggcagcatccagcacctgaaaaacaggtttggagatggctac
atgattactgtgcgcaccaagagcagccagaatgtgaaggacgtggtgcggttcttcaac
cggaacttcccggaggctgtgctcaaggagcgacaccacaccaaggtgcagtaccagctc
aagtcggagcacgtctctctggcccaggtgttcagcaagatggagcaggtggtgggcgtg
ctgggcatcgaagactactcggtcagccagaccaccctggacaatgtgtttgtgaacttt
gccaagaaacagagtgacaacttggaacagcaagagactgagccaccctcagccctgcag
tcccccctcgggcgcctgctcagcctgctgaggccccgaccagcccccactgagctacgt
gcactggtgacagatgagccagaggacttggacacagaggacgagggcctcatcagcttt
gaggaggagagggcccagctctccttcaacacggacaccctctgctga
DBGET
integrated database retrieval system
