Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101977225
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Entry
101977225 CDS
T10664
Symbol
Sympk
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03015
mRNA surveillance pathway
iti04530
Tight junction
Brite
Transcription machinery [BR:
iti03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101977225 (Sympk)
Messenger RNA biogenesis [BR:
iti03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
101977225 (Sympk)
U7-dependent histone pre-mRNA processing factors
101977225 (Sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
101977225
NCBI-ProteinID:
XP_005338297
UniProt:
I3LYS1
LinkDB
All DBs
Position
Unknown
AA seq
1271 aa
AA seq
DB search
MASGSGDSVTRRSVASQFFTQEEGPAIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYKVALQWMVKSRVISDLQEACWDMVSAMAGDIILLLDSDNDGIR
THAIKFVEGLIVTLSPRVADSEVPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLL
KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSGKDARKRPRDDSDSTLKKM
KLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPETMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
VVKPESVLIKRRLSAQGQAISVVGSLSSMSPLEEEVPQAKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFDSGL
KAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGPSGTLDKYEDCLIRLLSGLQEKPDQK
DGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDL
SSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
SRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVR
SFTPHQQAHIPNSIMTILEASGKQEPEAKEAPAGSLEEDDLEPLALAPAPAPRPPQDLIG
LRLAQEKALKRQLEEEQKLKPGGSGVPVASSSSSARQGPAPTEETMDFREEGPECETPAI
FISMDDDSGLTEAALLDSSLEGPLPKEATAGGLTSKEERSPQTLAPAGEDAVKTPSPTTE
EAGEPETKGNS
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtggcagtggggacagtgtcacccgccggagcgtggcatcacagtttttcaca
caagaggaggggccagccatcgatggcatgaccacctcagagagggtggtggatctcttg
aaccaggcagcgctgatcaccaacgactcaaagatcacagtactcaagcaggtccaggag
ctgatcatcaacaaagaccccacactactggacaacttcctggatgagatcatcgctttc
caagcagacaagtcgattgaagtgcgaaaatttgtcattggcttcatcgaggaagcatgc
aaacgagacattgagttactgctgaaactgattgcaaacctcaacatgctcttgagggac
gagaatgtgaatgtggtgaagaaggccatcctcaccatgacccaactctacaaagtagcc
ctgcagtggatggtgaagtcacgggtcatcagtgatctccaggaagcctgttgggacatg
gtgtctgccatggctggggacatcatcttactgttagactctgacaatgatggaatacga
acccacgccatcaaatttgtagagggcctcattgtcaccctgtcaccccgcgtggctgac
tcagaggtaccccgacgccaggagcatgacatcagcctggaccgcatccctcgagaccac
ccctacatccaatacaatgtgctgtgggaagagggcaaggcagccttggagcagctgctc
aagttcatggtgcaccccgccatctcctccatcaacctgaccacagcactgggctccctc
gccaatatcgcccgtcaaagacccatgttcatgtctgaggtgatccaggcctatgaaacc
ctgcatgccaacctcccgccaacgctggccaaatcgcaggtgagcagtgtacgcaagaac
ctcaagttgcacctgttgagtgtgctcaagcacccagcctccttggagttccaagcccaa
atcaccaccctgttagtggacctgggcacacctcaggctgagattgcccgcaatatgccc
agcggcaaggatgcccgcaagcggccccgagatgactcagattccacactcaagaagatg
aagttggagcccaacctgggggaagatgatgaagacaaggacttggagcctggtccatca
gggacctcaaaggcgtccgcccagatctcaggccagtcagacacagacatcacagccgag
ttcctgcagcctctgctgacgcccgacaatgtggccaatctggtcctcatcagcatggtg
tacttgcctgagaccatgcctgcctccttccaagccatctacactcctgtggagtcagca
ggaactgaagcccagatcaagcacttggctcggctcatggccacacagatgacggctgca
ggactgggtccaggtgtggagcagaccaaacagtgtaaggaggaacccaaggaagagaag
gtggtgaagccggagagtgtcctgatcaagaggcgtctgtcagcccagggccaagccatc
tctgtggtgggctctctgagctccatgtccccattggaagaggaggtgccccaggccaag
aggaggccagagcccatcatccctgttacacagccgcggctggcaggtgccggtgggcgc
aagaagatcttccgtttgagtgacgtgctgaagcccctgacagatgcccaggttgaagcc
atgaagctgggtgctgtgaagcggatcctgcgggctgagaaagctgtggcctgcagtggg
gcagcacaggtgcgcatcaagatcctagccagcctggtgacacagtttgactcaggtctg
aaggctgaggtcctgtccttcatcctggaggatgttcgggcccggctagacctggccttt
gcctggctctaccaggagtacaatgcttacctggcagcgggtccctcaggcaccctggac
aagtacgaggactgcctcatccgtctgctctctggcctgcaggagaaaccagaccagaaa
gatgggatcttcaccaaggtggtgctggaggcaccactcatcaccgagagtgccctggag
gtgattcgcaagtactgtgaagacgagagccgcacctatctgggcatgtctacccttcga
gacctgatcttcaagcgcccatcccgccagtttcagtacctgcatgtcctcctggacctc
agttcccacgagaaggacaaggtgcgttcccaggccctgctgttcatcaagcgcatgtac
gagaaggagcagctgcgggagtatgtggagaagtttgccctcaactacctgcagctcttg
gtccaccccaacccaccctctgtgctgtttggagctgacaaggacacagaggtggctgcg
ccctggactgaggagacagtgaagcaatgtctgtacctctacctggccctcctgcctcag
aaccacaagctgatccacgagctggccgctgtgtacaccgaggccatcgctgacatcaag
cggaccgtgctgagggtcattgagcagccgattcgaggaatgggcatgaactcaccagag
ctgctcctgctggtggaaaactgccccaagggggcagagacactagtcactcgatgtctg
cacagcctcacagataaagtgccaccctccccggagctggtgaagcgggtccgggacctc
taccacaagcggctgcccgatgtccgcttcctcatcccagtgcttaatgggctggagaag
aaggaggtgatccaggctctgcccaagctcatcaaactcaaccccatcgtggtgaaagaa
gtcttcaaccgcctgctgggcacccagcacggtgaagggaactctgccttgtcccccctg
aaccctggagagctcctgattgcattacacaacatcgactcggtgaagtgcgacatgaaa
tccatcatcaaagccaccaacctgtgctttgcggagcggaacgtatacacgtcggaggtg
ctggccgtggtgatgcagcagctgatggagcagagccccctgcccatgctgctcatgagg
accgtcatccagtccctgaccatgtacccccgcctggggggcttcgtcatgaacatcctc
tcccgcctcatcatgaagcaggtgtggaagtatcccaaagtgtgggagggcttcatcaag
tgctgccaacgaaccaagccccagagcttccaggtcatcctgcagctgccaccccagcag
ctgggagctgtctttgacaagtgccctgagctccgggagcccctgctggcccacgtgcgc
tccttcaccccccaccagcaagcacacatccccaactcgatcatgaccatcttggaggcc
agtggcaagcaagagccagaggccaaggaggcacctgcagggtccctggaagaggacgac
ctggaacccctggctctggcccctgctccggcccctcggccccctcaggacctcatcggc
ctgcggctggcccaggaaaaggccttaaagcggcagctagaggaggaacaaaagctgaag
cctggaggctcgggagtccctgtggcgtcttcctcgtcctcagcccgacagggtcctgcc
cccacggaggaaaccatggattttcgggaggaggggcctgagtgcgagacccctgccatc
ttcatcagcatggatgacgactctgggctgaccgaggccgcactcctggactctagtctt
gaggggcccttgcctaaggaagcaacagccggcgggctgacctcaaaggaagagcggagc
ccccagaccctcgcccctgcgggggaagacgctgtgaagacccctagccccaccacggag
gaagcgggggagccggagaccaaggggaacagctga
DBGET
integrated database retrieval system
