Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101977295
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Entry
101977295 CDS
T10664
Symbol
Abca1
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X2
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti02010
ABC transporters
iti04148
Efferocytosis
iti04975
Fat digestion and absorption
iti04979
Cholesterol metabolism
iti05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
101977295 (Abca1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
101977295 (Abca1)
09150 Organismal Systems
09154 Digestive system
04975 Fat digestion and absorption
101977295 (Abca1)
04979 Cholesterol metabolism
101977295 (Abca1)
09160 Human Diseases
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
101977295 (Abca1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
iti02000
]
101977295 (Abca1)
Transporters [BR:
iti02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
101977295 (Abca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
101977295
NCBI-ProteinID:
XP_005329801
UniProt:
I3LYA3
LinkDB
All DBs
Position
Unknown
AA seq
2261 aa
AA seq
DB search
MAYWPQLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGEAPGVVGNFNKSIVSRLFSDARRLLLYSRRDT
SVKDIHKVLRTLQQIKNSSPSLKLQDFLVDNETFSGFLNHNLSLPRPTVEKMLGADVSLQ
KVFLQGYQLHLTNLCNGSKLGEVIRLGDAEVFELCSLPREKLDAAERVLRSNMDILKPIV
TRLNSTSPFPSKQLAEATKTLLDSLGSLAQELFSMKSWSDMRQEVLFLTNVNSSSSSTQI
YQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNGTEEDADTFYDNSTTPYCNDLMK
NLESSPLSRIIWKALKPLLVGKILYTPDTPATRQVMAEVNKTFQELAVFHDLEGMWEELS
PKIWTFMENSQEMDLVRTLLDSRSNDRFWEQQLDGLDWTAQDIVAFLAKYPEDVQSANGS
VYTWREAFNETNRAIQTISRFMECVNLNKLEPIPTEVRLINKSMELLDERKFWAGIVFTG
IAPGSAELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVV
EQAIIRVLTGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIV
YEKEARLKETMRIMGLDNGILWFSWFISSLIPLLVSASLLVVILKLGNLLPYSDPSVVFV
FLSVFAVVTILQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFTVKIFAS
LLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTSVSMMLFDTFLYGVMTW
YIEAVFPGQYGIPRPWYFPCTKSYWFGEESDEKSHPGSSQKGISEICMEEEPTHLKLGVS
IQNLVKIYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIL
GKDIRSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYACLKGLSQKHVKAEMEQMALDVG
LPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQ
GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLS
SCRNSSSTVSYLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIRKHVSEARLVEDI
GHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEESGVDAE
TSDGTLPARRNRRAFGDKQSCLRPFTEDDAIDPNDSDIDPESRETDLLSGMDGKGSYQVK
GWKLTQQQFVALLWKRLLIARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQ
PWMYNEQYTFVSNDAPEDTGTQQLLNALTKDPGFGTRCMEGNPIPDTPCLAGEEEWTTAP
VPQTIMDLFQNGNWTMQNPSPACQCSSDKIKKMLPVCPPGAGGMPPPQRKQNTADILQNL
TGRNISDYLVKTYVQIIAKSLKNKIWVNEFRYGGFSLGVSNSQALPPSQEVNDAIKQMKK
HLKLAKDSSADRFLNNLGRFMTGLDTKNNVKVWFNNKGWHAISSFLNVINNAILRANLQK
GENPSQYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQER
VSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVLAL
LLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNNIN
DILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAVEG
VVFFLITVLIQYRFFIRPRPVKAKLPPLNDEDEDVRRERQRILDGGGQNDILEIKELTKI
YRRKRKPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTTVTRGDAFLNKNSILSN
IHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEK
YAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIVKEGRSVVLT
SHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQEFFG
LAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFVNF
AKDQSDDDHLKDLSLHKNQTVVDVSVLTSFLQDEKVKESYV
NT seq
6786 nt
NT seq
+upstream
nt +downstream
nt
atggcttattggcctcagttgaggttgctgctgtggaagaacctcactttcagaagaaga
caaacatgtcagctcttgctggaagtggcctggcctctgtttatcttcctgatcctaatc
tctgttcggctgagctacccaccctatgaacaacatgaatgtcactttccaaataaagcc
atgccctctgcaggaacacttccttgggttcaggggattatctgtaatgccaacaacccc
tgtttccgttatccaacccctggtgaggctccaggggttgttggaaactttaacaagtcc
attgtatctcgcctgttctcagatgctcggaggcttcttttatacagccggagagacacc
agcgtgaaagacatacacaaagttctgaggacattacagcagatcaagaattccagtcca
agcttgaagcttcaggatttcctggtggacaatgaaaccttctcaggattcctgaatcac
aatctgtctctaccaaggccaactgtggagaaaatgctgggggctgatgtcagtctgcag
aaggtatttttgcaaggttaccagttacatttgaccaatctgtgcaacggatccaaatta
ggagaagtgattcgacttggtgatgcagaagtttttgagctttgcagtctaccaagggag
aaactggatgcggcagagcgagtgcttcgttccaacatggacatcctgaagccgatcgtg
acaagactgaactctacatctcccttcccaagcaaacagctggccgaagccaccaagact
ctgctggatagtctcgggagtctggcccaagagctgttcagcatgaagagctggagcgac
atgcgacaggaggtgttgtttctgaccaacgtgaacagctccagctcctccacccagata
taccaggctgtgtcccgcatcgtctgtggccatccagagggtggggggctgaagatcaag
tctctgaactggtatgaggacaacaactacaaagccctcttcggaggcaatggcactgag
gaagatgctgacactttctatgacaactctacaactccttattgcaatgatttgatgaag
aatttggagtctagtcctctttcccgcatcatttggaaagctctcaagcctctgcttgtt
gggaagattctgtatacacctgacactccggccacgaggcaggttatggcagaggtgaac
aagaccttccaggagttggctgtgttccatgacctggaaggcatgtgggaagagctcagc
cccaagatctggaccttcatggagaatagccaagaaatggaccttgttcggacgctgttg
gacagcagaagcaatgaccgcttctgggaacagcagttggacggcttagattggacagcc
caagacatcgtggcgtttctggccaagtacccagaggatgtccagtctgccaatggctct
gtgtacacctggagagaagctttcaacgagaccaacagggcaatccagaccatatctcgc
ttcatggagtgtgtcaacctgaacaagctggaacccatacccacagaggtccggctcatc
aacaagtccatggagctgctggatgagaggaagttctgggctggtatcgtgttcacagga
attgctccaggcagtgccgagctgccccatcacgtcaagtacaaaatccgaatggacatt
gacaatgtggagagaacaaacaaaatcaaggatgggtactgggatccaggtcctcgggct
gacccctttgaggatatgcggtacgtctggggaggcttcgcctacttgcaagatgtggtg
gagcaggcgatcatcagggtactgacgggcactgagaagaaaactggtgtctatgtgcag
cagatgccttacccctgttatgtcgatgacatcttcctgcgggtaatgagccgctcaatg
cccctcttcatgacgctggcctggatctactctgtggctgtgatcatcaagggcatcgtg
tatgagaaggaggcgaggctgaaggagaccatgcggatcatgggcctggacaacggcatc
ctatggtttagctggttcatcagtagcctcatccctctgcttgtgagtgccagcctgcta
gtggtcatcctgaagttaggaaacctgctgccctacagcgaccccagcgtggtgtttgtc
ttcctgtctgtgtttgctgtggtgaccatcctgcagtgcttcctgattagcacactcttc
tcccgagccaacctggcagcagcctgtgggggcatcatttatttcacgctgtacctgccc
tatgtcctgtgcgtggcatggcaggactatgtgggcttcacagtcaagatcttcgcgagc
ctgctgtctcctgtggcttttgggtttggctgtgagtactttgccctttttgaggagcag
ggcattggtgtgcagtgggacaacctctttgagagccctgtggaggaagatggcttcaat
ctcaccacttcagtctccatgatgctgttcgacaccttcctctatggggtgatgacctgg
tacattgaggctgtctttccaggccagtatggaattcccaggccctggtattttccttgc
accaagtcctactggtttggtgaagaaagtgatgagaagagccaccctggttctagccag
aagggaatatcagaaatctgcatggaagaggaacccacccacctgaagctgggtgtgtcc
attcagaacctggtgaagatttaccgagatggcatgaaggtggctgttgatggcctggcg
ctgaatttttatgagggccagatcacctcctttctgggccacaatggagcagggaagaca
accaccatgtcaatcctgactgggttgttccctcccacctccggcacggcctacatcttg
ggaaaggatattcgctctgagatgagcaccatccggcagaacctgggggtctgtccccag
cacaatgtgctatttgacatgcttactgtggaagagcacatttggttctatgcctgcctg
aagggactttcccagaagcatgtgaaagcagagatggaacagatggccctggatgttggt
ctgccgcccagcaagctgaaaagcaaaacaagtcagttgtcaggtgggatgcagagaaag
ctgtctgtggccttggcctttgttggggggtccaaggttgtcattctggatgagcccaca
gctggtgtggatccctactcccgcaggggaatatgggagctgctgctgaaataccgacaa
ggccgcaccattattctctccacacaccacatggatgaagcagacatcctgggggacagg
attgccatcatttcccatgggaagttgtgctgtgtgggctcctccctgttcttgaagaac
cagctgggaacaggctactacctgacactggtcaagaaagatgtggaatcctccctgagt
tcctgccgaaatagcagcagcactgtgtcatacctgaaaaaggaggacagtgtttctcag
agcagttctgatgctggcctgggcagcgaccatgaaagtgacacgctgaccatcgatgtc
tcagccatctccaacctcatcaggaagcatgtgtctgaagcccggctagtggaagacatt
gggcatgagttgacctacgtactgccatatgaagctgctaaggagggggcatttgtggaa
ctcttccatgagatcgatgaccggctctcagacctgggcatatccagttatggcatctca
gagactaccttggaagaaatattcctcaaagtggctgaagagagtggggtggatgctgag
acctcagatggaaccttgccagcaagacgaaaccgacgggcctttggagacaagcagagc
tgccttcgcccatttactgaagatgatgctattgatcccaatgattctgacatagaccca
gaatccagggagacagacctgctcagcgggatggatggtaaaggctcctatcaggtgaag
ggctggaaactcacacagcaacagtttgtggctcttttgtggaagaggctgctgatcgcc
agacggagtagaaaaggattcttcgctcagattgtcctgccagctgtgtttgtctgcatt
gccctggtgttcagcttgattgtgccaccctttggcaagtaccctagcctggaacttcag
ccctggatgtacaatgagcagtatacgtttgtcagtaatgatgctcctgaggacactggt
acccagcaactcttgaatgccctcaccaaagaccctggttttgggacccggtgtatggaa
ggaaacccaatcccagacacaccctgcttggcaggggaggaggagtggactactgcccca
gttccccagaccatcatggacctcttccaaaatgggaactggacaatgcagaacccttca
cctgcctgccagtgtagcagtgacaaaatcaaaaagatgctgcctgtgtgtcccccaggg
gcaggggggatgccacctccacagagaaaacagaacactgcagacatccttcagaatctg
acgggaaggaatatctcggattacctggtgaagacgtatgtgcagatcatagccaaaagc
ttaaagaataagatctgggtgaatgagtttaggtatggtgggttttccctcggtgtcagt
aactctcaagcacttcctccaagtcaagaagttaatgatgccatcaagcaaatgaagaaa
cacttgaagctggccaaggacagttctgcagatcgatttctcaacaacttgggaaggttc
atgacaggactggacaccaaaaataatgtcaaggtgtggttcaataacaaaggctggcat
gctatcagctctttcctgaatgtcatcaacaatgccattctccgggccaacctgcagaag
ggagagaaccctagccagtatgggattactgctttcaatcaccccctgaatctcaccaag
cagcagctttcagaagtggctctaatgaccacgtcagtagatgtacttgtgtccatatgt
gtcatctttgcgatgtcctttgtcccagccagctttgttgtgttcctgatccaggaacgg
gtcagcaaagccaagcacctacagtttatcagtggagtgaagcctgtcatctactggctt
tccaattttgtctgggatatgtgcaattatgtggttcctgctacattggtcattatcatc
ttcatctgctttcagcagaagtcctatgtgtcctccaccaacctgcctgtgctagccctt
cttcttttgctatatgggtggtcaatcacacctcttatgtacccagcctcctttgtgttc
aagattcccagcacagcctatgtggtgctcaccagcgtgaacctcttcatcggcatcaat
ggcagtgtggccacttttgtgctagagctctttaccaacaataagctgaataacatcaat
gatatcctgaagtctgtgttcttgatcttcccacatttttgcttgggacgagggctcatt
gatatggtgaaaaaccaggcaatggctgatgccctggaaagatttggggagaatcgcttt
gtgtcaccactctcttgggacttggtaggacgaaacctttttgccatggctgtggaagga
gtggtatttttcctcattactgttctgatccagtacagattcttcatcagacccagacca
gtgaaagcaaagcttcctcctttgaatgatgaggatgaagatgtaaggcgggaaagacag
agaattctggatggtggaggacagaatgatatcttggaaatcaaggagttgactaagata
tataggaggaagaggaagcctgctgttgacaggatttgtgttggcattcctcctggtgag
tgctttggacttctaggagttaatggtgctgggaaatcatccacattcaagatgctaacc
ggagacaccactgttaccagaggggatgctttccttaacaaaaatagtatcttgtcaaac
atccatgaagtacatcagaacatgggctattgccctcagtttgatgctatcacagagctg
ctgactggaagagagcatgtagagttctttgccctcttgagaggagtcccagagaaagaa
gttggcaaggttggtgaatgggcaattcggaaactgggccttgtgaagtatggagaaaaa
tatgctggtaactatagtggaggcaacaagcgcaagctttcaacagccatggctttgatt
ggtgggccacctgtggtatttctggatgaaccaaccacaggcatggatcccaaagcccga
agattcttgtggaattgtgccctaagcatcgtcaaggaggggagatcagtagtgcttaca
tctcatagtatggaggaatgtgaagctctttgcactaggatggcaattatggtcaatggg
aggttcaggtgccttggcagtgtacaacatctgaaaaataggtttggagatggttataca
atagttgtacgaatagcaggatccaatcctgacctgaagcctgtccaggaattctttgga
cttgccttcccaggaagcgtcctaaaagagaaacaccggaacatgttacagtaccagctt
ccctcttcattatcttctctggccaggatattcagtatcctctcccagagcaaaaagcga
ctccacatagaagactactctgtttctcagacaacacttgaccaagtatttgtgaacttt
gccaaggaccaaagtgatgatgaccacttaaaggacttgtcattacacaaaaaccagaca
gtagtggatgtttcagttctcacgtcttttctacaggatgagaaagtgaaagaaagttat
gtatga
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integrated database retrieval system
