Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101977295
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Entry
101977295 CDS
T10664
Symbol
Abca1
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X2
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti02010
ABC transporters
iti04148
Efferocytosis
iti04975
Fat digestion and absorption
iti04979
Cholesterol metabolism
iti05417
Lipid and atherosclerosis
Brite
Transporters [BR:
iti02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
101977295 (Abca1)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
101977295
NCBI-ProteinID:
XP_005329801
UniProt:
I3LYA3
LinkDB
All DBs
Position
Unknown
AA seq
2261 aa
AA seq
DB search
MAYWPQLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGEAPGVVGNFNKSIVSRLFSDARRLLLYSRRDT
SVKDIHKVLRTLQQIKNSSPSLKLQDFLVDNETFSGFLNHNLSLPRPTVEKMLGADVSLQ
KVFLQGYQLHLTNLCNGSKLGEVIRLGDAEVFELCSLPREKLDAAERVLRSNMDILKPIV
TRLNSTSPFPSKQLAEATKTLLDSLGSLAQELFSMKSWSDMRQEVLFLTNVNSSSSSTQI
YQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNGTEEDADTFYDNSTTPYCNDLMK
NLESSPLSRIIWKALKPLLVGKILYTPDTPATRQVMAEVNKTFQELAVFHDLEGMWEELS
PKIWTFMENSQEMDLVRTLLDSRSNDRFWEQQLDGLDWTAQDIVAFLAKYPEDVQSANGS
VYTWREAFNETNRAIQTISRFMECVNLNKLEPIPTEVRLINKSMELLDERKFWAGIVFTG
IAPGSAELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVV
EQAIIRVLTGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIV
YEKEARLKETMRIMGLDNGILWFSWFISSLIPLLVSASLLVVILKLGNLLPYSDPSVVFV
FLSVFAVVTILQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFTVKIFAS
LLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTSVSMMLFDTFLYGVMTW
YIEAVFPGQYGIPRPWYFPCTKSYWFGEESDEKSHPGSSQKGISEICMEEEPTHLKLGVS
IQNLVKIYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIL
GKDIRSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYACLKGLSQKHVKAEMEQMALDVG
LPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQ
GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLS
SCRNSSSTVSYLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIRKHVSEARLVEDI
GHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEESGVDAE
TSDGTLPARRNRRAFGDKQSCLRPFTEDDAIDPNDSDIDPESRETDLLSGMDGKGSYQVK
GWKLTQQQFVALLWKRLLIARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQ
PWMYNEQYTFVSNDAPEDTGTQQLLNALTKDPGFGTRCMEGNPIPDTPCLAGEEEWTTAP
VPQTIMDLFQNGNWTMQNPSPACQCSSDKIKKMLPVCPPGAGGMPPPQRKQNTADILQNL
TGRNISDYLVKTYVQIIAKSLKNKIWVNEFRYGGFSLGVSNSQALPPSQEVNDAIKQMKK
HLKLAKDSSADRFLNNLGRFMTGLDTKNNVKVWFNNKGWHAISSFLNVINNAILRANLQK
GENPSQYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQER
VSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVLAL
LLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNNIN
DILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAVEG
VVFFLITVLIQYRFFIRPRPVKAKLPPLNDEDEDVRRERQRILDGGGQNDILEIKELTKI
YRRKRKPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTTVTRGDAFLNKNSILSN
IHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEK
YAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIVKEGRSVVLT
SHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQEFFG
LAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFVNF
AKDQSDDDHLKDLSLHKNQTVVDVSVLTSFLQDEKVKESYV
NT seq
6786 nt
NT seq
+upstream
nt +downstream
nt
atggcttattggcctcagttgaggttgctgctgtggaagaacctcactttcagaagaaga
caaacatgtcagctcttgctggaagtggcctggcctctgtttatcttcctgatcctaatc
tctgttcggctgagctacccaccctatgaacaacatgaatgtcactttccaaataaagcc
atgccctctgcaggaacacttccttgggttcaggggattatctgtaatgccaacaacccc
tgtttccgttatccaacccctggtgaggctccaggggttgttggaaactttaacaagtcc
attgtatctcgcctgttctcagatgctcggaggcttcttttatacagccggagagacacc
agcgtgaaagacatacacaaagttctgaggacattacagcagatcaagaattccagtcca
agcttgaagcttcaggatttcctggtggacaatgaaaccttctcaggattcctgaatcac
aatctgtctctaccaaggccaactgtggagaaaatgctgggggctgatgtcagtctgcag
aaggtatttttgcaaggttaccagttacatttgaccaatctgtgcaacggatccaaatta
ggagaagtgattcgacttggtgatgcagaagtttttgagctttgcagtctaccaagggag
aaactggatgcggcagagcgagtgcttcgttccaacatggacatcctgaagccgatcgtg
acaagactgaactctacatctcccttcccaagcaaacagctggccgaagccaccaagact
ctgctggatagtctcgggagtctggcccaagagctgttcagcatgaagagctggagcgac
atgcgacaggaggtgttgtttctgaccaacgtgaacagctccagctcctccacccagata
taccaggctgtgtcccgcatcgtctgtggccatccagagggtggggggctgaagatcaag
tctctgaactggtatgaggacaacaactacaaagccctcttcggaggcaatggcactgag
gaagatgctgacactttctatgacaactctacaactccttattgcaatgatttgatgaag
aatttggagtctagtcctctttcccgcatcatttggaaagctctcaagcctctgcttgtt
gggaagattctgtatacacctgacactccggccacgaggcaggttatggcagaggtgaac
aagaccttccaggagttggctgtgttccatgacctggaaggcatgtgggaagagctcagc
cccaagatctggaccttcatggagaatagccaagaaatggaccttgttcggacgctgttg
gacagcagaagcaatgaccgcttctgggaacagcagttggacggcttagattggacagcc
caagacatcgtggcgtttctggccaagtacccagaggatgtccagtctgccaatggctct
gtgtacacctggagagaagctttcaacgagaccaacagggcaatccagaccatatctcgc
ttcatggagtgtgtcaacctgaacaagctggaacccatacccacagaggtccggctcatc
aacaagtccatggagctgctggatgagaggaagttctgggctggtatcgtgttcacagga
attgctccaggcagtgccgagctgccccatcacgtcaagtacaaaatccgaatggacatt
gacaatgtggagagaacaaacaaaatcaaggatgggtactgggatccaggtcctcgggct
gacccctttgaggatatgcggtacgtctggggaggcttcgcctacttgcaagatgtggtg
gagcaggcgatcatcagggtactgacgggcactgagaagaaaactggtgtctatgtgcag
cagatgccttacccctgttatgtcgatgacatcttcctgcgggtaatgagccgctcaatg
cccctcttcatgacgctggcctggatctactctgtggctgtgatcatcaagggcatcgtg
tatgagaaggaggcgaggctgaaggagaccatgcggatcatgggcctggacaacggcatc
ctatggtttagctggttcatcagtagcctcatccctctgcttgtgagtgccagcctgcta
gtggtcatcctgaagttaggaaacctgctgccctacagcgaccccagcgtggtgtttgtc
ttcctgtctgtgtttgctgtggtgaccatcctgcagtgcttcctgattagcacactcttc
tcccgagccaacctggcagcagcctgtgggggcatcatttatttcacgctgtacctgccc
tatgtcctgtgcgtggcatggcaggactatgtgggcttcacagtcaagatcttcgcgagc
ctgctgtctcctgtggcttttgggtttggctgtgagtactttgccctttttgaggagcag
ggcattggtgtgcagtgggacaacctctttgagagccctgtggaggaagatggcttcaat
ctcaccacttcagtctccatgatgctgttcgacaccttcctctatggggtgatgacctgg
tacattgaggctgtctttccaggccagtatggaattcccaggccctggtattttccttgc
accaagtcctactggtttggtgaagaaagtgatgagaagagccaccctggttctagccag
aagggaatatcagaaatctgcatggaagaggaacccacccacctgaagctgggtgtgtcc
attcagaacctggtgaagatttaccgagatggcatgaaggtggctgttgatggcctggcg
ctgaatttttatgagggccagatcacctcctttctgggccacaatggagcagggaagaca
accaccatgtcaatcctgactgggttgttccctcccacctccggcacggcctacatcttg
ggaaaggatattcgctctgagatgagcaccatccggcagaacctgggggtctgtccccag
cacaatgtgctatttgacatgcttactgtggaagagcacatttggttctatgcctgcctg
aagggactttcccagaagcatgtgaaagcagagatggaacagatggccctggatgttggt
ctgccgcccagcaagctgaaaagcaaaacaagtcagttgtcaggtgggatgcagagaaag
ctgtctgtggccttggcctttgttggggggtccaaggttgtcattctggatgagcccaca
gctggtgtggatccctactcccgcaggggaatatgggagctgctgctgaaataccgacaa
ggccgcaccattattctctccacacaccacatggatgaagcagacatcctgggggacagg
attgccatcatttcccatgggaagttgtgctgtgtgggctcctccctgttcttgaagaac
cagctgggaacaggctactacctgacactggtcaagaaagatgtggaatcctccctgagt
tcctgccgaaatagcagcagcactgtgtcatacctgaaaaaggaggacagtgtttctcag
agcagttctgatgctggcctgggcagcgaccatgaaagtgacacgctgaccatcgatgtc
tcagccatctccaacctcatcaggaagcatgtgtctgaagcccggctagtggaagacatt
gggcatgagttgacctacgtactgccatatgaagctgctaaggagggggcatttgtggaa
ctcttccatgagatcgatgaccggctctcagacctgggcatatccagttatggcatctca
gagactaccttggaagaaatattcctcaaagtggctgaagagagtggggtggatgctgag
acctcagatggaaccttgccagcaagacgaaaccgacgggcctttggagacaagcagagc
tgccttcgcccatttactgaagatgatgctattgatcccaatgattctgacatagaccca
gaatccagggagacagacctgctcagcgggatggatggtaaaggctcctatcaggtgaag
ggctggaaactcacacagcaacagtttgtggctcttttgtggaagaggctgctgatcgcc
agacggagtagaaaaggattcttcgctcagattgtcctgccagctgtgtttgtctgcatt
gccctggtgttcagcttgattgtgccaccctttggcaagtaccctagcctggaacttcag
ccctggatgtacaatgagcagtatacgtttgtcagtaatgatgctcctgaggacactggt
acccagcaactcttgaatgccctcaccaaagaccctggttttgggacccggtgtatggaa
ggaaacccaatcccagacacaccctgcttggcaggggaggaggagtggactactgcccca
gttccccagaccatcatggacctcttccaaaatgggaactggacaatgcagaacccttca
cctgcctgccagtgtagcagtgacaaaatcaaaaagatgctgcctgtgtgtcccccaggg
gcaggggggatgccacctccacagagaaaacagaacactgcagacatccttcagaatctg
acgggaaggaatatctcggattacctggtgaagacgtatgtgcagatcatagccaaaagc
ttaaagaataagatctgggtgaatgagtttaggtatggtgggttttccctcggtgtcagt
aactctcaagcacttcctccaagtcaagaagttaatgatgccatcaagcaaatgaagaaa
cacttgaagctggccaaggacagttctgcagatcgatttctcaacaacttgggaaggttc
atgacaggactggacaccaaaaataatgtcaaggtgtggttcaataacaaaggctggcat
gctatcagctctttcctgaatgtcatcaacaatgccattctccgggccaacctgcagaag
ggagagaaccctagccagtatgggattactgctttcaatcaccccctgaatctcaccaag
cagcagctttcagaagtggctctaatgaccacgtcagtagatgtacttgtgtccatatgt
gtcatctttgcgatgtcctttgtcccagccagctttgttgtgttcctgatccaggaacgg
gtcagcaaagccaagcacctacagtttatcagtggagtgaagcctgtcatctactggctt
tccaattttgtctgggatatgtgcaattatgtggttcctgctacattggtcattatcatc
ttcatctgctttcagcagaagtcctatgtgtcctccaccaacctgcctgtgctagccctt
cttcttttgctatatgggtggtcaatcacacctcttatgtacccagcctcctttgtgttc
aagattcccagcacagcctatgtggtgctcaccagcgtgaacctcttcatcggcatcaat
ggcagtgtggccacttttgtgctagagctctttaccaacaataagctgaataacatcaat
gatatcctgaagtctgtgttcttgatcttcccacatttttgcttgggacgagggctcatt
gatatggtgaaaaaccaggcaatggctgatgccctggaaagatttggggagaatcgcttt
gtgtcaccactctcttgggacttggtaggacgaaacctttttgccatggctgtggaagga
gtggtatttttcctcattactgttctgatccagtacagattcttcatcagacccagacca
gtgaaagcaaagcttcctcctttgaatgatgaggatgaagatgtaaggcgggaaagacag
agaattctggatggtggaggacagaatgatatcttggaaatcaaggagttgactaagata
tataggaggaagaggaagcctgctgttgacaggatttgtgttggcattcctcctggtgag
tgctttggacttctaggagttaatggtgctgggaaatcatccacattcaagatgctaacc
ggagacaccactgttaccagaggggatgctttccttaacaaaaatagtatcttgtcaaac
atccatgaagtacatcagaacatgggctattgccctcagtttgatgctatcacagagctg
ctgactggaagagagcatgtagagttctttgccctcttgagaggagtcccagagaaagaa
gttggcaaggttggtgaatgggcaattcggaaactgggccttgtgaagtatggagaaaaa
tatgctggtaactatagtggaggcaacaagcgcaagctttcaacagccatggctttgatt
ggtgggccacctgtggtatttctggatgaaccaaccacaggcatggatcccaaagcccga
agattcttgtggaattgtgccctaagcatcgtcaaggaggggagatcagtagtgcttaca
tctcatagtatggaggaatgtgaagctctttgcactaggatggcaattatggtcaatggg
aggttcaggtgccttggcagtgtacaacatctgaaaaataggtttggagatggttataca
atagttgtacgaatagcaggatccaatcctgacctgaagcctgtccaggaattctttgga
cttgccttcccaggaagcgtcctaaaagagaaacaccggaacatgttacagtaccagctt
ccctcttcattatcttctctggccaggatattcagtatcctctcccagagcaaaaagcga
ctccacatagaagactactctgtttctcagacaacacttgaccaagtatttgtgaacttt
gccaaggaccaaagtgatgatgaccacttaaaggacttgtcattacacaaaaaccagaca
gtagtggatgtttcagttctcacgtcttttctacaggatgagaaagtgaaagaaagttat
gtatga
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integrated database retrieval system
