Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101978629
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Entry
101978629 CDS
T10664
Symbol
Cic
Name
(RefSeq) protein capicua homolog isoform X6
KO
K20225
capicua transcriptional repressor
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti05017
Spinocerebellar ataxia
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
101978629 (Cic)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
iti03000
]
101978629 (Cic)
Transcription factors [BR:
iti03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
101978629 (Cic)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
101978629
NCBI-ProteinID:
XP_005338212
UniProt:
A0A287DAI2
LinkDB
All DBs
Position
Unknown
AA seq
1611 aa
AA seq
DB search
MYSAHRPLMPASGAASRGLGMFVWTNVEPRSVAVFPWHSLVPFLAPSQPDPSVQPSEAQQ
PASHPVASNQSKEPAESAAVAHEQSSGGTGNADPGRPPGATCPESPGPGPPHTLGVVEPG
KGPPPTTEEEASGPPGEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKRRTQSLSALPKE
RDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYA
LGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSEAKPTSLGLAGGHKETRERSM
SETGTAAAPGVSSELLSVAAQTLLSSDTKAPGSGSCGTERLHTVGGPGSARPRAFSHSGV
HSLDGGEVDSQALQELTQMVSGPTSYSGPKPSTQYGAPGPFTAPGEGGALAASGRPPLLP
TRASRSQRAASEDMTSDEERMVICEEEGDDDVIADDGFGTTDIDLKCKERVTDSESGDSS
GEDPEGNKGFGRKVFSPVIRSSFTHCRPALDPEPPGPPDPPAAFNKGYGPTPSSSSSSPA
VSSASVATSFSLGSGTFKAQESGQGSAAGPLRPPPPGSGGPATPSKTTRFLPTDPATFRR
KRPESVGGLEPPGPSVIAAPPSGGGNILQTLVLPPNKEEREGSGARVPSAPTPSLAYGAP
AAPLSRPAATMVTNVVRPVSSTPVPIASKPFPTCGRVEASPNDTASGRTEVGTGSRVPGG
SPLGVSLVYSDKKSAAAAPPAPHLVAGPLLGTVGKAPATVTNLLVGTPGYGAPAPPAVQF
IAQGTPSSGTTVGSGAGAGSGPNGPVPLGILQPGALGKSGGITQVQYILPTLPQQLQVAP
APAPAPGTKAATPSGPAPTTSIRFTLPPGTSTNGKVLAATAPTPGIPILQSVPSAPPPKA
QSVSPVQAPPPGGSAQLLPGKVLVPLAAPSMSVRGGGAGQPLPLVSPPFSVPVQNGAQPP
SKIIQLTPVPVSTPSGLVPPLSPATLPGPTSQPQKVLLPSSTRITYVQSAGGHTLPLGTS
PTSSQAGAVTSYGPTSSVALGFTSLGPSGPAFVQPLLSAGQAPLLAPGQVGVSPVPSPQL
PPACAAPGGPVITAFYPGSPVPTSSAPLAQASQAPPSLVYTVATSTTPPAATILPKGPPA
PATATPAPSSPFPSATGSMTYSLVAPKAQRPSPKAPQKVKAAIASIPVGSFEAGASGRPG
PAPRQPLEPGPAREPPVPESELEGQPTPPGPPPLPETWPSTARSSPPPPLPAEERTGTKG
PETMASKFPSSSSDWRVPGLGLESRGEPPTPPSPAPAPAAASGGSSSGSSEGSSGRAAGD
TPERKETASTGKKVKVRPPPLKKTFDSVDNRVLSEVDFEERFAELPEFRPEEVLPSPTLQ
SLATSPRAILGSYRKKRKNSTDLDSAPEDPTSPKRKMRRRSSCSSEPNTPKSAKCEGDIF
TFDRTGTEAEDVLGELEYEKVPYSSLRRTLDQRRALVMQLFQDHGFFPSAQATAAFQARY
ADIFPSKVCLQLKIREVRQKIMQAATPTEQPPGAEASLPGPSPTGTAATPAPTPSPAGAP
DPTSPGSDSGTAQAAPPLPLPPEPGPGQPGWEGAPQPSPPPSGPSTAATGR
NT seq
4836 nt
NT seq
+upstream
nt +downstream
nt
atgtactcggcccacaggcccctgatgcccgcgtccggcgcggcctcccgtggcctcggc
atgttcgtgtggacaaacgtggaacctcgctctgtggctgtgttcccctggcactcctta
gttccctttctggcacccagccagccagacccctctgtgcagccgagtgaagcccagcaa
cctgccagccacccagtggcctccaatcagagcaaagaacctgctgagtcggcagctgtt
gctcatgagcaatcatcaggagggacagggaatgctgaccccgggcgacctcctggagcc
acatgccctgagagcccagggcctggacccccacatactttgggggtggtggaacctggt
aaaggtccccctcctaccacggaggaagaagcttctggtcccccaggagagccccggctg
gatagtgagacagagagtgaccatgatgatgccttcctttccatcatgtctccggagatt
cagttgcctctgccacctggaaaacgtcggacacagtccctcagtgccctgcccaaggaa
cgagactcatcttctgagaaggatggacgcagccccaataagcgggagaaggaccatata
cggcgacctatgaatgccttcatgatcttcagtaagcggcaccgggccctggtccaccag
cgccaccccaaccaggacaaccggaccgtcagcaagattctgggagagtggtggtacgcc
ctggggcccaaagagaagcagaagtaccatgacctggccttccaggtgaaggaggcccac
ttcaaggcccacccagattggaagtggtgcaacaaggaccgaaagaagtccagctcagag
gccaagcccacgagcctggggctggcaggagggcacaaggagacgcgggagcggagcatg
tcggagacgggcactgccgccgcccctggggtgtcctctgagctcctgtccgttgcagcc
cagacactcctgagctccgacaccaaggctccagggagtggctcctgtggaacagaacgg
ctgcacacagttgggggacctggctcggcccgacctcgagccttctcccatagtggtgta
cacagcctggatggtggggaagttgacagccaggcactgcaagagttgactcagatggtg
tctggccccacgtcatactctggcccaaagccttccacccagtatggcgctccaggtccc
ttcacagcccctggtgaaggaggtgccttagcagccagtgggcgacctccattattgccc
acccgagcctctcgttcccagcgtgctgctagtgaagacatgacaagtgatgaggaacgc
atggtcatctgtgaggaggaaggggacgatgatgtcattgctgatgatggctttggcacg
actgacattgatctaaagtgcaaggagcgggtgactgacagcgagagtggagacagctct
ggggaggatccagagggcaacaagggctttggccgcaaggtgttttcaccagtgatccgt
tcctcctttacccattgccgtccagcattggaccctgagccaccagggcccccagatcca
cctgcagccttcaacaaaggctatggtcccaccccatcctcctcctcctcatcacctgcc
gtctcctcagcctcggtagccacctccttctctctgggctctggaaccttcaaggcccag
gagtctggtcagggcagtgcagcaggaccacttcggcctccacctcctgggtctggtggc
ccagctacaccttccaagaccacccggttcctcccaacggatcctgccactttccggcgc
aagagacctgaaagcgttgggggcctggagccaccaggtccctcagtcattgcggcacct
cccagtgggggaggaaacattctgcagacattggtcctgcccccaaacaaggaggagcgg
gagggcagtggggcccgagtaccctcagccccaaccccatcactggcctatggggcccca
gcagcccctctgtcccgccctgctgccaccatggtcaccaatgtggtgcgacctgttagc
agcactcctgtgcccattgcctctaagcccttccccacctgtggccgggttgaggcatct
ccaaatgacacggcaagtggcagaactgaagtaggcactgggtctcgagtgcctgggggc
tccccactgggtgttagcttagtgtattcggacaagaagtcagcagcggccgccccacca
gccccacacttggtggctgggcccctcttgggcactgtggggaaggcacctgccactgtt
accaacctacttgtgggtaccccaggctatggggcccctgcaccccctgctgttcagttc
attgcccagggaacccctagtagtgggaccactgtgggctcaggagcaggtgctgggagt
ggacccaatgggccagtacccctgggtatcctgcaaccaggtgccctgggcaagtctggg
ggaatcacccaggtacagtacatcctgcccacgctgccccagcagcttcaagtggcacct
gccccagcaccagcccctgggaccaaggcagcgactcccagcggccctgcacccaccacc
agcatccgtttcacccttccgccgggcacctccaccaacggcaaggtcctggccgccact
gcacccactcctggcattcccatcctgcagtctgtaccctccgccccaccccctaaagcc
cagtcagtttctcctgtgcaggccccacccccaggtggctcagcccagctgctgcctggg
aaggtactagtgcccctggcagcccctagcatgtcagtgcggggtggcggggctggccag
ccgctgcccctggtgagtccacctttctcagtacctgtgcagaatggtgcccagccacct
agcaagattatccagttgactcccgtgcctgtgagcacacccagcggcctggtgccgccc
ttgagcccagccacactccccggacccacctcacagccccagaaagtcttgttgccctcc
tctaccagaatcacctatgtgcagtcggcaggtgggcacacgctgcccttgggcaccagc
cctacatccagccaggctggagcagtcacctcatatgggcctacaagttctgtagctcta
ggtttcacctcactagggcccagcggccctgccttcgtgcagcccctgctctcagcaggc
caagccccattgctggctcccggccaagtgggtgtgtcacctgtgcccagccctcagctg
cctcctgcctgtgcagcccctggaggtcctgtcataacagcattttatcctggcagccct
gtacccacctcctcagcacccctggcccaggcatcccaggcaccccccagcctggtctac
actgtggccactagcaccaccccacctgctgccaccattctgcccaagggcccaccagct
cctgccactgccaccccagcccccagtagcccttttcctagtgccacaggctccatgacc
tacagcttagtggccccgaaggcccagcggcccagcccaaaggccccccagaaagtgaag
gcagccatcgccagcattcccgtgggctcctttgaggcaggtgcctctgggcggcctggt
cctgcaccccggcagcccctggagcctggcccagccagagaaccacctgttccagagtct
gagcttgaggggcagcctacaccaccaggccctccaccactcccagagacctggccttcc
acggcccggagcagcccccccccacccctgcctgctgaagagcggactggcaccaagggc
cctgagaccatggccagcaaattccccagctcgtcttcagactggcgcgtccctgggctg
ggcctggagagtcgtggggaaccccccactcctcccagcccggccccagctccagccgca
gcctctggtggcagcagcagtggcagcagtgagggcagcagtgggagggcggccggggac
acaccagagcgcaaggagacggctagtaccggcaagaaggtgaaggtgcggcccccgccc
ctgaagaagacctttgactctgtggacaacagggtcctgtcagaggtggactttgaagag
cgctttgctgagctgcctgaatttcggccagaggaggtgcttccctcacccaccttgcag
tctctggccacctcaccccgagccatcctgggctcttaccgcaaaaagagaaagaactcg
actgacctggactcagcacctgaagaccccacctcacccaagcgcaagatgaggagacga
tccagctgcagctcagagcccaacacccccaagagtgccaagtgcgagggggatatcttc
acctttgaccgcacaggtacagaagctgaggatgtacttggggagctggaatatgagaag
gtgccatactcatcactgcgacgcaccctggaccagcgccgggccctggttatgcagctc
tttcaggaccatggcttcttcccatctgctcaggccacagcagctttccaggcccgctac
gcggacatcttcccatccaaggtttgtctgcagttgaagatccgtgaggtgcgccagaag
attatgcaggcagccactcccacagagcagcctcctggagctgaggcctccctccctgga
ccttcccccactggcaccgctgctacccctgctcccactcccagccctgctggggcccct
gaccccacctcacctggctcggactctggcacagcccaggctgccccaccactgcctcta
cccccagagccaggacctgggcagcctggttgggagggggccccccagccctctccccca
ccctcaggcccctccacagctgccacaggcaggtga
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