Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101978689
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Entry
101978689 CDS
T10664
Symbol
Cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase [EC:
2.8.4.5
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
iti03016
]
101978689 (Cdkal1)
Enzymes [BR:
iti01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
101978689 (Cdkal1)
Transfer RNA biogenesis [BR:
iti03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
101978689 (Cdkal1)
Prokaryotic type
Methylthiotransferases
101978689 (Cdkal1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM
Motif
Other DBs
NCBI-GeneID:
101978689
NCBI-ProteinID:
XP_040139596
LinkDB
All DBs
Position
Unknown
AA seq
529 aa
AA seq
DB search
MPGSFPLILRSPKTLCPRKIQSHKTDILQEGRWFRKCEGAIPRSSQKRTVRQVTENASDA
DLWLLNSCTVKNPAEDHFRNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQID
RVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYC
KTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPSLLWRLVEV
IPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYSFLHIPVQSASDSVLMAMKREYCVAD
FRRVVDFLKEKVPGITIATDIICGFPGETDEDFQETVKLVEEYKFPSLFINQFYPRPGTP
AAKLEQVPAQVKKHRTKDLSRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQ
VLVPKNPPFMGKMVEVDIYESGKHFMKGRPVSDAKVFTPSISKPLAKGEVSGLAQEFRRR
LGAASSVPPTSAASPRAALQGLHQDPALRVAVGLALLALLLAFLVKVYT
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgcctggctcctttcctttaatcttgagatctcctaagacattgtgtcccaggaagatt
caaagccacaagacagacattcttcaagaaggcaggtggttccgaaagtgcgaaggcgca
atacccagatcttcccagaagagaacagtccgccaagtgacagaaaatgcgtcagatgca
gatctgtggctcctgaacagttgcactgtgaagaacccagccgaagaccactttagaaac
tccattaaaaaagctcaagaggagaacaagaaagtcgtgctagccgggtgcgtgccccag
gcgcagcctcgccaggactacctcaaggggctgagcatcatcggggttcaacagatagat
cgtgtggtggaagttgtggaggaaacaattaaaggccactctgtgcgacttctgggccag
aagaaggataatggaaaacggctggggggagctcggttggatttgcccaagatcaggaag
aacccactgatagaaataatttccatcaataccgggtgtctcaatgcatgtacctactgc
aaaactaaacacgccagaggaaatttggccagttatcccattgatgaactagtagataga
gccaaacagtcttttcaagagggtgtctgtgagatctggttgaccagtgaagacacgggg
gcctacggcagggatattggcaccgacctcccctcgctcctgtggcgcctggttgaagtc
attcccgagggagcgatgctgaggctcggcatgacgaaccccccctatatcctagagcat
ctggaggaaatggcgaagatccttaaccatccccgagtctactccttcctgcacataccc
gtccagtccgcctccgacagcgtgctcatggccatgaaaagagaatactgcgtggctgac
ttccggagagtcgtggatttcctgaaggagaaagttcctggaataactattgctacagat
atcatctgtggttttcctggagaaacagatgaggattttcaagaaacagtgaagctggtt
gaagagtacaaatttccaagcctctttattaaccagttttacccaagacccggaactcct
gctgcaaaactggagcaggtgccagcacaagtgaagaaacacaggaccaaagacctttct
cgtgtgtttcactcctacagtccgtatgatcacaagattggtgaacgacagcaagtgtta
gtaacagaagaatcttttgattccaagttctatgttgcacacaatcgcttctatgagcag
gttttagtgccaaagaaccctccattcatggggaagatggttgaagtggacatttatgaa
tcaggaaagcattttatgaaaggacggccagtatcggatgccaaagtgttcacgccatcc
atcagcaaaccgctagcaaaaggagaggtctcaggcttagcacaggaattcagaaggcgg
cttggggctgcgagctcggtgccccccacctctgcagcgagtcccagagccgctctgcag
gggctccatcaggaccctgcgctgcgggtggccgtgggcctggcgctgctggcgctgctt
ctggcgttcttggtcaaggtctacacttag
DBGET
integrated database retrieval system
