Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 110596969
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Entry
110596969 CDS
T10664
Symbol
Lrrc4c
Name
(RefSeq) leucine-rich repeat-containing protein 4C
KO
K07523
netrin-G1 ligand
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04360
Axon guidance
iti04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
110596969 (Lrrc4c)
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
110596969 (Lrrc4c)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
iti04515
]
110596969 (Lrrc4c)
Cell adhesion molecules [BR:
iti04515
]
Immunoglobulin superfamily
NGL family
110596969 (Lrrc4c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
LRR_1
LRR_14
V-set
LRR_9
Ig_2
LRRNT
Ig_6
LRR_LRWD1
Sp38
Herpes_gE_N
Syndecan
Motif
Other DBs
NCBI-GeneID:
110596969
NCBI-ProteinID:
XP_005340208
UniProt:
I3MZI2
LinkDB
All DBs
Position
Unknown
AA seq
640 aa
AA seq
DB search
MLNKMTLHPQQIMIGPRFNRALFDPLLVVLLALQLLVVAGLVRAQTCPSVCSCSNQFSKV
ICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF
NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG
ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQ
GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH
NPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPP
ADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQD
TGMYTCMVSNSVGNTTASATLNVTAATTTPFSYFSTVTVETMEPSQDEARTTDNNVGPTP
VIDWETTNVTTSLMPQSTRSTEKTFTIPVTDINSGIPGIDEVMKTTKIIIGCFVAITLMA
AVMLVIFYKMRKQHHRQNHHAPTRTVEIINVDDEITGDTPMESHLPMPAIEHEHLNHYNS
YKSPFNHTTTVNTINSIHSSVHEPLLIRMNSKDNVQETQI
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaagatgaccttacatccacagcagataatgataggtcctaggtttaacagg
gccctatttgaccccctgcttgtggtgctgctggctcttcaacttcttgtggtggctggt
ctggtgcgggctcaaacctgcccttccgtgtgctcctgcagcaaccagttcagcaaggtg
atttgtgttcggaaaaacctgcgtgaggttccagatggcatctccaccaacacgcggctg
ctgaaccttcatgagaaccaaatccagatcatcaaagtgaacagcttcaagcacttgagg
cacttggaaatcctccagttgagtcggaaccatattagaaccattgaaattggggccttc
aatggtctggcgaacctcaacactctggaactctttgacaatcgtcttactaccatcccg
aatggagcttttgtatatttgtctaaactgaaggagctctggttgcgaaacaaccccatt
gaaagcatcccttcttatgcttttaacagaatcccttccttgcggcgactagacttaggg
gaattgaaaaggctttcatatatctcagaaggtgcctttgaaggtctgtccaacttgagg
tatttgaaccttgccatgtgcaacctccgggaaatccctaacctcacaccgctcataaaa
ctggatgagctagatctttctgggaatcacttgtccgcaatcaggcctggctctttccag
gggttgatgcaccttcaaaaactgtggatgatacagtcccagattcaagtgattgaacgg
aatgcctttgataaccttcagtccctagtggagatcaacctggcccacaacaatctcaca
ttactgcctcatgacctctttacacccttgcatcatctagagaggatacacttacatcac
aacccttggaactgtaactgtgacatactgtggctcagctggtggataaaagacatggcc
ccctccaacacagcttgctgcgcccggtgtaacactcctcccaatctgaaagggaggtac
atcggggagctcgaccagaattatttcacatgctatgctcctgtgattgtggaaccccct
gcagacctcaatgtcactgaaggcatggcagctgagctaaagtgtcgggcctccacgtcc
ctgacgtccgtgtcttggatcactccaaatggaacagtcatgacacacggggcgtacaaa
gtacggatagctgtgctcagtgacggtacattaaatttcacgaatgtaaccgttcaagat
acaggcatgtatacgtgtatggtgagtaattctgttgggaacactactgcttcagccacc
ctgaatgttactgcagcaaccacgactcccttctcttacttctccactgtcacagtagag
acaatggaaccttctcaggatgaggcacggaccacagacaacaatgtgggccccactcca
gtgattgattgggagaccactaatgtgaccacctctctcatgccacagagcacaaggtca
acagaaaaaacattcaccatcccagtgactgatatcaacagtgggatcccaggaatcgat
gaggtcatgaagaccaccaaaatcatcattgggtgtttcgtggccatcacactcatggcg
gcagtgatgctggtcatcttctacaagatgagaaagcagcaccataggcaaaaccatcac
gctccgacaaggactgttgaaatcatcaacgtggatgatgagatcacaggggacacaccc
atggaaagccacctgcccatgcctgctatcgagcatgagcatctaaaccactataattcc
tacaaatctcccttcaaccacacaacaacagttaacacaataaattcaatacacagttca
gtgcatgaaccgttattgatccgaatgaactctaaagacaatgtacaagagactcaaatc
taa
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