KEGG   Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 110598275
Entry
110598275         CDS       T10664                                 
Name
(RefSeq) M1-specific T cell receptor beta chain-like
  KO
K10785  T-cell receptor beta chain V region
Organism
iti  Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04014  Ras signaling pathway
iti04015  Rap1 signaling pathway
iti04020  Calcium signaling pathway
iti04064  NF-kappa B signaling pathway
iti04514  Cell adhesion molecules
iti04612  Antigen processing and presentation
iti04658  Th1 and Th2 cell differentiation
iti04659  Th17 cell differentiation
iti04660  T cell receptor signaling pathway
iti04672  Intestinal immune network for IgA production
iti04940  Type I diabetes mellitus
iti05135  Yersinia infection
iti05142  Chagas disease
iti05144  Malaria
iti05150  Staphylococcus aureus infection
iti05162  Measles
iti05166  Human T-cell leukemia virus 1 infection
iti05169  Epstein-Barr virus infection
iti05170  Human immunodeficiency virus 1 infection
iti05202  Transcriptional misregulation in cancer
iti05235  PD-L1 expression and PD-1 checkpoint pathway in cancer
iti05310  Asthma
iti05320  Autoimmune thyroid disease
iti05321  Inflammatory bowel disease
iti05322  Systemic lupus erythematosus
iti05323  Rheumatoid arthritis
iti05330  Allograft rejection
iti05332  Graft-versus-host disease
iti05416  Viral myocarditis
Brite
KEGG Orthology (KO) [BR:iti00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04014 Ras signaling pathway
    110598275
   04015 Rap1 signaling pathway
    110598275
   04064 NF-kappa B signaling pathway
    110598275
   04020 Calcium signaling pathway
    110598275
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    110598275
 09150 Organismal Systems
  09151 Immune system
   04612 Antigen processing and presentation
    110598275
   04660 T cell receptor signaling pathway
    110598275
   04658 Th1 and Th2 cell differentiation
    110598275
   04659 Th17 cell differentiation
    110598275
   04672 Intestinal immune network for IgA production
    110598275
 09160 Human Diseases
  09161 Cancer: overview
   05202 Transcriptional misregulation in cancer
    110598275
   05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
    110598275
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    110598275
   05170 Human immunodeficiency virus 1 infection
    110598275
   05162 Measles
    110598275
   05169 Epstein-Barr virus infection
    110598275
  09171 Infectious disease: bacterial
   05135 Yersinia infection
    110598275
   05150 Staphylococcus aureus infection
    110598275
  09174 Infectious disease: parasitic
   05144 Malaria
    110598275
   05142 Chagas disease
    110598275
  09163 Immune disease
   05310 Asthma
    110598275
   05322 Systemic lupus erythematosus
    110598275
   05323 Rheumatoid arthritis
    110598275
   05320 Autoimmune thyroid disease
    110598275
   05321 Inflammatory bowel disease
    110598275
   05330 Allograft rejection
    110598275
   05332 Graft-versus-host disease
    110598275
  09166 Cardiovascular disease
   05416 Viral myocarditis
    110598275
  09167 Endocrine and metabolic disease
   04940 Type I diabetes mellitus
    110598275
SSDB
Motif
Pfam: C1-set V-set Ig_3 C2-set_2 Marek_A DUF5022
Other DBs
NCBI-GeneID: 110598275
NCBI-ProteinID: XP_040147269
LinkDB
Position
Unknown
AA seq 295 aa
MGVRLLWGVALCFLAVGLVDTGVTQTPRFLVKRMGEKAVLECLQDMDYERMFWYRQDPGL
GLRLIYFSYDADNNDKGDIPEGYSVSRKKREKFSLILESASFTQTALYLCACSLNLCANT
SPLFFGTGTRLTVTEDLKKVTPPKVTVFEPSEVEIDRKKKATLVCLATDFYPDHVELSWW
VNGKEVQNGVSTDPQPSSAANASRYFLSSRLRVSATFWLNPRNHFRCQVQFHGLSEEXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKATVYAVLVSTLVLMAMVKRKDS
NT seq 888 nt   +upstreamnt  +downstreamnt
atgggagtgaggctgctctggggggtggccctttgtttcctggcagtgggccttgtggac
acaggagtaacccagaccccgagattccttgtcaaaaggatgggggagaaagctgtgctg
gagtgtttacaggatatggactatgaaagaatgttctggtatcgacaagacccgggcctg
gggctacggctgatctatttttcgtatgatgctgacaataatgacaaaggagatatccct
gaggggtacagtgtctctcggaagaagagggagaaattctccctgatcctggagtctgcc
agcttcacacagacggctctgtacctctgtgcctgcagtttgaacctgtgcgccaatact
tcgcctctcttctttgggactggtaccaggctcaccgtgacagaggacctgaagaaggtg
accccacccaaggtcactgtgtttgagccatcagaagtagagatcgacaggaaaaaaaag
gccaccctcgtgtgcctggccacagacttctacccagaccacgtggagctgagctggtgg
gtgaatggaaaggaggtgcaaaatggggtcagcacggaccctcagccctccagtgccgcc
aatgcctccagatacttcctgagcagtcgcctgagggtctctgccaccttctggctcaac
cctcgcaaccacttccgctgccaagtgcagttccacgggctctcagaggaagannnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngggaaggccactgtgtatgctgtgctg
gtcagcaccctggtgctgatggccatggtcaagagaaaggattcctga

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