Ipomoea triloba (trilobed morning glory): 115996308
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Entry
115996308 CDS
T07384
Name
(RefSeq) probable CCR4-associated factor 1 homolog 6
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115996308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
115996308
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115996308
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115996308
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
115996308
NCBI-ProteinID:
XP_031091366
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Position
11:8454451..8456078
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AA seq
279 aa
AA seq
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MSLLPKSDSIQIREVWDYNLEEEFDLIREIVDDYPYIAMDTEFPGIVLRPVGSFKNSNDY
HYQTLKDNVDMLKLIQLGLTFSDEKGNLPTCGTDKYCIWQFNFREFNPNEDVFASDSIEL
LRQSGIDFEKNTEKGIEARRFGELLMSSGIVLNDNVHWVTFHSGYDFGYLLKILTCQALP
ETQPGFFALINMYFPVVFDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTA
CTFRKLKDNFFSGSLEKYAGVLYGLGVENGQYSSSSTHW
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcttttgccaaaaagcgattcgattcagattagagaagtgtgggattataacctg
gaagaagagtttgatctgatcagagaaatcgtagacgattacccgtatattgccatggat
acggagtttccgggcattgttctacggccggtggggagtttcaagaacagtaacgattac
cattatcaaaccctgaaggataatgtggacatgttgaagttgatacaactggggctaacc
ttttcggacgagaagggaaacctgccaacttgtgggactgacaagtactgcatttggcag
ttcaatttcagggaattcaatcccaacgaggatgttttcgcgagcgattccatcgagctg
ctgcggcagagtgggattgacttcgagaagaacacggagaaggggatcgaggctaggaga
ttcggggagctgttgatgtcatcagggattgtgttgaacgataatgttcactgggtgaca
ttccacagcgggtatgatttcgggtacctgctgaagatactgacttgccaggcgttgccg
gagacgcagccggggttctttgccctcatcaacatgtatttcccggtcgtgttcgacatc
aagcacttgatgaagttctgcaacagcctccatggcgggttgaacaagctcgcggagctg
ttggaagtcgagagagtgggcgtctgccatcaagccggctcggatagcttgctcactgct
tgtaccttcaggaagttgaaagacaacttctttagtggctcactggagaagtatgctggt
gtcttgtatggtctaggcgttgagaatggacagtatagcagcagcagcacccattggtga
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