Ipomoea triloba (trilobed morning glory): 115996625
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Entry
115996625 CDS
T07384
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03022
Basal transcription factors
itr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115996625
09124 Replication and repair
03420 Nucleotide excision repair
115996625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
itr03021
]
115996625
03400 DNA repair and recombination proteins [BR:
itr03400
]
115996625
Transcription machinery [BR:
itr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
115996625
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
115996625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
115996625
NCBI-ProteinID:
XP_031091815
LinkDB
All DBs
Position
11:24525046..24531128
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AA seq
281 aa
AA seq
DB search
MAPASSKLYTDDVSLLMVLIDTNPFFWSSMKNNDSFTFSKFLSHVISFLNSILLLSQLNQ
VVVIATGHNSCDYIFDSSDSPNQRAECMLEKLEEFVDKDESLSQEDSVDGVGSSLLSGSL
SMALCYIQRVFRSGPLHPQPRILCIHGSPDGPGQYVAIMNSIFSAQRSMVPIDSCAIGAQ
HSAFLQQASYITNGVYLKPQILDGLFQYLSTVFATDLHSRAFLHLPRPVGVDFRASCFCH
KNTIDMGYICSVCLSIFCKHQAQCSTCGSVFGKARGQEPAP
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atggctccagcatcatcaaagctttacacagatgatgtaagcttattgatggtgctgatt
gacaccaatcctttcttctggagctcaatgaagaataatgattccttcacattctctaaa
ttcctatctcatgttatatcatttttgaattcaatattattactgagccagctgaaccaa
gtggttgtgatagccactgggcacaactcatgtgactatatatttgattcctctgactcc
ccaaatcagagggcagagtgcatgttggagaaattggaggagtttgtggacaaggacgag
tcattgagtcaagaagattcggttgatggagttgggtcttcgcttctctctgggtcactt
tcaatggctctctgctatatacaaagggtgtttcgttcagggccactccatccgcaacct
cggatattgtgtattcacggatctccggatgggcctggacaatacgtggccatcatgaat
tcaattttctctgctcaacgttcaatggtaccaatagattcatgtgctataggagcccaa
cattcagctttcttgcagcaggcttcatacataactaatggtgtatatttgaagccccaa
atattagatggactgtttcaatatctttcgactgtgtttgctacggatttgcattctcgt
gcctttttacatcttcccaggcctgtgggagttgacttccgtgcttcgtgcttttgccac
aaaaatacaattgacatgggctatatatgctctgtttgtttatccattttctgcaagcat
caggctcaatgctcgacatgcggatcggtttttggtaaggctagaggacaggaacctgca
ccgtaa
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