Ipomoea triloba (trilobed morning glory): 115996774
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Entry
115996774 CDS
T07384
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr04120
Ubiquitin mediated proteolysis
itr04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115996774
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
115996774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
itr04121
]
115996774
Enzymes [BR:
itr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115996774
Ubiquitin system [BR:
itr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115996774
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
115996774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_EIPR1
EIF3I
Beta-prop_DCAF4
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
zf-C3HC4_2
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
zf-C3HC4
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
WD40_RFWD3
WD40_like
zf-C3HC4_3
Beta-prop_SCAP
zf-RING_2
Beta-prop_WDR35_TULP_N
zf-C3HC4_4
Beta-prop_WDR75_1st
zf-RING_UBOX
U-box
WDR90_beta-prop_4th
eIF2A
Beta-prop_DCAF12
zf-RING_5
zf-RING_6
zf-RING_10
YpoC
DUF1664
Motif
Other DBs
NCBI-GeneID:
115996774
NCBI-ProteinID:
XP_031092039
LinkDB
All DBs
Position
11:3605811..3611749
Genome browser
AA seq
671 aa
AA seq
DB search
MGEREAECEGESSMVGAVVPAVKPRNADEPSISHRDEATPSGMEPELDKELLCPICMQII
KDAFLTSCGHSFCYMCIVTHLHNKSDCPCCSHYLTTAQLYPNFLLDKLLKKTSAHQISKT
ASPVEQFRHSIEQGCEVSIKELDVLLTILAEKKRKLEQEEAERNMQILLEFLHMLKKKKV
DELNEIQNDLQYIKEDVNAVERHRIELYRTRDRYSMKLRMLADDPLGSKSRSSSVDRNAI
GLFPSSRSAHGGLASGNLMYKKMDGSQRKDVSVTELNSQHMSQSGLAVVRKKRVHAQFND
LQECYLQKRRQLANQLQNKEERDQNVTRREGYTAGLSEFQSVLSTFTRYSRLRVIAELRH
GDIFHSANIVSSIEFDRDDELFATAGVSRRIKVFDFSSVVNEPADVHCPVVEMSTRSKLS
CLSWNKYTKNHIASSDYDGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTDPSMLVSGSD
DCKVKVWCTKQEKSAFNIDMKANICCVKYNPGSSFHVAVGSADHHIHYYDLRNTSQPVHT
FSGHKKAVSYVKFLSSHELASASTDSTLRLWDVKDNSPVRVFRGHTNEKNFVGLSVNNEF
ISCGSETNEVFVYHKAISKPVTWHRFGSPDVDDVDEDITSFFISAVCWKSDSPTMLAANS
QGTIKVLVLAA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgggggagcgagaggctgagtgcgagggggagagttccatggtcggcgcagtggttccg
gcggtgaagcccaggaacgccgacgaaccgagtatcagtcaccgggacgaggcgacgccg
tcgggaatggagccggagctagacaaggagttgctgtgtccgatatgtatgcagatcatc
aaagatgcattcctgacttcctgcggccatagcttctgctatatgtgcatcgtcactcat
ctccacaacaagagcgactgcccttgctgctcccattatctcaccaccgcccaactctac
cctaatttcctcctcgacaagctattgaagaagacatctgctcatcagatttcaaaaact
gcatctcctgtagagcaatttcgtcattcaatagaacagggttgtgaagtgtcgattaag
gagctggatgttctattgacaattttggcagaaaaaaagagaaagctggaacaggaagaa
gcagaacgaaacatgcaaattctactcgagttcttacacatgttaaagaagaaaaaagtt
gatgagctgaatgagatacaaaatgatctccagtacattaaagaggatgtaaatgctgtg
gagagacatagaatagagctgtaccggacaagggacaggtactctatgaaactacgaatg
cttgcagatgatcctttggggtcaaaatctcggtcttcatcagttgataggaatgcaatt
ggtcttttcccctcctcccgttctgcacatggaggattagcatctgggaacttgatgtac
aaaaaaatggatggttcccaaaggaaggatgtttctgtcactgaattgaattcacaacac
atgagccaatctggtctagctgttgtgaggaaaaaacgtgtacatgcacagttcaatgat
ctgcaagaatgttacttgcaaaagagacgccagttggcaaaccagttacaaaataaggaa
gagagggaccaaaatgttacgcgaagagaaggttacactgcaggtctgtcagaattccag
tctgtactgagtacattcacacgctatagtcgactaagagttattgctgagctaaggcat
ggagatatttttcactcagctaatattgtttctagcatagaatttgatcgtgatgatgaa
ttgtttgctactgctggagtttcacgacgcatcaaagtatttgatttctcttcggttgtg
aatgaacctgcagatgtgcactgtcctgttgtagagatgtcaactcgatccaagcttagc
tgcttgagctggaataagtacaccaaaaaccacattgctagtagtgattacgatggaata
gtgactgtctgggatgtgactacgagacagagtgttatggaatatgaggaacatgaaaaa
cgggcatggagtgtcgatttttctcgaacagatccctcaatgcttgtatccggtagtgat
gattgtaaggttaaagtctggtgcacaaagcaagaaaaaagtgcctttaatattgacatg
aaggcaaatatatgttgtgtgaaatataatcccggatctagttttcatgttgcggttggc
tcagcagatcatcacatccattattatgacctgcgaaacaccagccaaccagtccatact
ttcagtggccacaaaaaagctgtttcatatgtaaaatttttgtctagccacgagcttgca
tcagcctcaaccgacagcactctgcgactatgggatgtaaaagataattcacctgttcgt
gtatttagagggcatacaaatgagaaaaattttgtcggtctctcggtgaacaacgaattc
atttcttgcggcagtgaaaccaatgaggtttttgtctaccacaaggcgatctcgaaaccc
gtgacttggcataggtttggttccccagacgtagacgacgtggatgaagacataacgtct
ttcttcatcagtgcagtatgctggaagagtgatagccctacaatgctagctgctaacagc
cagggaaccatcaaggtgctggtgcttgctgcctga
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