Ipomoea triloba (trilobed morning glory): 115997564
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Entry
115997564 CDS
T07384
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115997564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
itr04131
]
115997564
Membrane trafficking [BR:
itr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
115997564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
TPR_Vps41
Clathrin
Beta-prop_WDR5
Beta-prop_WDR3_1st
ANAPC4_WD40
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
WD40_CDC20-Fz
TPR_VPS8_2
Beta-prop_WDR36-Utp21_1st
WD40_Gbeta
Beta-prop_HPS5
Beta-prop_THOC3
Beta-prop_RIG_2nd
Beta-prop_EML
WD40_Prp19
WD40
Beta-prop_Aladin
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
zf_RING_Vps8
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
115997564
NCBI-ProteinID:
XP_031093006
LinkDB
All DBs
Position
11:25416743..25429602
Genome browser
AA seq
1946 aa
AA seq
DB search
MMMELDLDSILHSHAHTFSDDDDDDDRFIPHRTVDEILLNHSSSSSASPSPPPSPSTSVR
RQEQSDGTSVSPSSEALRLTHSHSLSSELNPSTSIITRIKSDDFSSLPPFLSGVIRSNAK
PGAALAAAAAASRSIPTPHAAAIRRASSSSATVRKVFKHGQDLASSAANDAEVASSSSAG
AVEGLVATEDIFTPEIDGSSNILDNFQSPKLQRTDQADSSGELSLPDITQESLSGTSGVL
AKADADNDDDLVSKIGNSGQSSSTTPVETSIDSAIRSERCFDVDGNSVQSELLERKYDNG
QHLPANEDNTVYAETITTVEDILPSSVSGCEVSFDKEISPTVPEMELENVVPDTGNHEVL
SGGEDNSSKNEAADILEEQVMQEDDKRDSMKTGKKSLPSLRPIELAEELEKKQTFAGMHW
EEGAAAQPMRLEGVRRGSTALGYFDISAENTLTHNFSTPTFRQDHGSPQVLTVHLNYIAV
GMSKGLVIIVPSRYTPHQVDNMDAKMLMLSLHGERAHIPVTSLCFNHQGDLLFAGYGDGQ
YVVWDVQRASAAKVVTEHKAPVVHLFFLGQDSRQFNVISGDSKGIVKLIRFSIVPWLNRI
SFSKSMKLLDETTSTVVCASPLLSGDSLGTALTPSLDSNSVSGGSVGSMMGGMVGGDTGW
KLFDGSSLSEEGVVVFVTHQSALVAKVSPNVEVYAQLPRPDGVREGCMPYAAWKCVPGMH
NSSNEDVPVESSHKVSLLAIAWDHKIQVAKLVKSDLKVLWEWTLDNSAVGVAWLDDQMLV
ILTSTGQLCLFEKDGNLIHQTSFSTDGPRGDDLISYHTYFSNAHGNPEKAHHNCIAVRGA
NVYILGTLQLVVSRLLPWKERIEVLRKAGDWMGALNMAMTLYDGQAHGVIDLPRNLSDVQ
KTVMPYLVELLLSYVEEVFSYLSVAFSNQSGKLCHSDESNDNETKEQYARVGGVAVEFCL
HINRTDVLFDEIWKRFDNEKQQDTFLELLEPYILKDMLGSLPPEIMQVLVEHYSNKGWLQ
RVEQCVLHMDISSLDFNQVVRICREHMLYGALIYLFNKGLGDFKAPLEELFSIIRNSKGE
TAAPFGYKMLVYLKYCFQGLAFPPGHGTLSTKILPSLRKELVQFLLEDSCLPNSLAISSF
PANGPHSNLLYLLQLDTEATLDILQYAFVEDVPQLNHISDDSTNSDTESAEVNGLSDSQN
LVQELVDVLAAILDASFFQSSNSCSSDDDRSIDIWPSKRERDHILDFIAYYVSCERAKVS
KSTLSQILEYLTSETDSSHNASENDETSKRRQKQLVTLLEVLPEHEWDAPYLLHLCEKAQ
FHQVCGLIHSIRHQYLAALDSYIKDVDEPIHAFSFIHDMLQQLGNKDSDAFRSAVISRIP
DLAKLSREETFFMVISHFGEKFQHILSELRSHPKSLFLYLKTLIEVQSSGSLKFSSMRNE
NVLEFPSLRKGMHQSLKIQAYLESLSKFPKVMQNYPVHVTDEMMELYLELLCQYERNSVC
KFLESLESYRVEHCLRLCLEHGITDAAAFLYERVGDVGSALSLLLSTLNDKFILLDASIE
KELCGARLKHFNNLLETKEVNDILEMVHCSISLCQRNSPRLDPYESECLWFELLDSFCEP
LIDSFNDKVEYEGDKSVGISVNSMGNLKDEGACRIKWKVSKSHQNAEVLRRLLSFFIKEI
VEGMIGYVRLPTIMLKLLSENGSQEFGDFKLTIMGMLGTYDFERRILDTAKALIEDDTYY
TMSLLKRGASHGYAPRSLTCCVCNCLLSRSSSIQIFSCGHAMHLHCELPENGTSSKGSSV
GCPICMPRKNSQRSRSKSMSSENGLVSKTSKSQQGHGPANALHLHDNDFLDISFGHHPVS
RFELLSNLQKEQRPAHVEQMPKLRLAPPALYHEKVNKRIEFQTGESSSKVEKPSRNRQLR
DIKVKGSAIRFPLKSNIFGKEKIVKR
NT seq
5841 nt
NT seq
+upstream
nt +downstream
nt
atgatgatggagctcgatctcgattccatcctccattcacatgcccacaccttctccgac
gacgacgacgatgacgatcgctttatccctcatcgaactgtcgacgaaattctactcaat
cactcctcctcttcttctgcttcgccttctcctcctccttctccgtccacttcggttaga
cgtcaggaacaatccgacggcacttcagtctctccttcttccgaagccctaagattaacg
cattcgcactcgctctcttcggaattgaatccgtctacttcaattattactcgaataaag
tccgatgatttctcttctttgcctccgtttctctctggggttatcagatcaaacgccaag
cctggggctgctctggcagctgcagctgctgcgtcgcgctccattccaacgcctcacgct
gccgctattaggagagccagctccagctctgcaaccgtgcgaaaggttttcaagcacggc
caagacttggcttcctcagccgccaatgatgccgaggttgcctcctctagcagtgctggc
gctgttgaggggttagtggcaactgaagatatatttacccctgagattgatggcagctct
aatatattggataatttccaatcccctaaattgcaaagaactgaccaggcagattcaagt
ggggaactttcgttgccagatataactcaggagagtttgagcggaacaagtggagttttg
gctaaggcggatgctgataatgatgatgatttagtatctaagataggtaattccggccaa
tcttcctccactaccccagttgaaaccagcattgactccgccataaggagtgaaaggtgt
ttcgatgttgatgggaattctgtacaatcagagttactggagagaaaatatgataacggt
caacatttaccagcaaatgaagacaatactgtttatgctgaaaccatcaccacagtagag
gatattcttccttcctctgtttctggctgtgaagtcagttttgacaaggagataagccca
acagttcctgaaatggaactggagaatgtggtacctgatactgggaatcatgaggttctt
tcaggaggagaggataacagttctaagaatgaagctgcagatattttggaagagcaagta
atgcaagaggatgataagagggatagtatgaagacaggaaagaaatccctgccttcctta
agacctattgaattagctgaagaacttgaaaagaagcagacatttgcaggaatgcactgg
gaagagggtgctgctgcccaacctatgaggcttgagggagttcgtaggggatctactgcc
ttgggttactttgacataagtgctgaaaatactcttactcacaacttctccacaccaact
ttcaggcaagatcatggttccccccaggttttgacagttcatctcaactacatagcagtt
ggaatgtcaaaaggactggttatcattgtgcccagtagatatacacctcatcaagttgac
aacatggatgcaaagatgttgatgctgagtttacatggggagagggctcatatccccgta
acttccttgtgctttaatcatcaaggggacttactctttgcaggatatggtgatgggcaa
tatgtggtgtgggatgtgcaaagggcctctgcagctaaagttgtgactgaacataaagct
ccagtagttcacctcttttttctgggtcaggattctcgacagtttaatgtgatcagtgga
gatagtaagggtatagtcaaattgattcgcttttccatagttccctggctcaataggatt
tcattttctaaatctatgaagctgctagatgaaacaacaagcaccgtagtctgtgcttct
ccattactctctggtgatagtcttggaactgctctgacaccttctctagacagcaattca
gtgtctggtggcagtgtcggtagtatgatgggaggcatggttggtggagatactgggtgg
aaactctttgatggatcttctctgagtgaggaaggagtggtcgtatttgtcacacatcag
tctgctctagtggctaaagtgagtcctaatgtagaggtttatgctcaacttcccagacca
gatggtgttagggagggttgcatgccctatgcggcttggaaatgtgtgcctgggatgcac
aattcttcaaatgaagatgtgcctgttgagtcatcacataaagtttcactgcttgcaatt
gcatgggatcataaaattcaagttgctaagttggtaaagtcagacctaaaagttctctgg
gaatggaccttggataattcagcagttggagtggcatggttggatgatcagatgttggta
attctcacgtcaactggacagctctgtctgtttgaaaaagatggaaatctgatccaccag
acaagtttctctacagatgggcctcgtggagatgatctcatttcatatcatacatacttt
agtaatgcccatgggaaccctgagaaagctcatcacaactgtatagctgttaggggggcc
aatgtatacattctaggaacattgcagcttgttgtctcccgcctcctcccttggaaggaa
cggatagaagttttgcgaaaagcaggtgactggatgggtgcactgaacatggcaatgaca
ctttatgatggtcaagcacatggtgtaattgacctccctagaaatttaagtgatgttcag
aagactgttatgccatatctcgttgagttactattgtcatatgtagaagaggtattttca
tacttatctgtagcattcagcaaccaaagtgggaagttgtgccattcagatgagtcaaat
gataatgaaactaaggagcagtacgcacgggttggtggtgttgctgttgaattctgtctc
catatcaacagaactgatgtcctctttgatgaaatatggaaaagatttgataatgaaaaa
caacaagatacattcttggagcttttggagccttacatattgaaagatatgctcggttcc
ctgccaccagagattatgcaagtgctagtggaacattacagcaacaaaggttggttgcag
cgagttgaacaatgtgttctccacatggatatttcatcattggatttcaatcaggttgtt
cgcatatgcagggaacacatgttgtatggagcactaatatacttgttcaacaaaggtctt
ggtgatttcaaggcacccctagaggagcttttttcaattataagaaatagcaaaggagag
actgctgcgccatttgggtacaagatgcttgtttacctgaagtactgtttccagggtctt
gcttttcctcctgggcatggaactctctctactaaaatcctgccatctcttagaaaagag
cttgttcaatttctgttagaagactcttgcttgccgaattcattggcaatttcaagcttt
ccagccaatgggccacattcaaacctgctttatctattacagctggatactgaagctaca
ttagatattctgcaatatgcatttgtagaagatgttccacaattgaaccatatttctgat
gattcaaccaattcagacactgaatcagctgaagtaaatggtttgtctgacagtcaaaac
ttggtccaagaactagtagatgtcttagctgcaattcttgatgcaagtttcttccaaagt
agcaactcttgtagcagtgatgatgatagatccattgatatctggccttcaaagagagag
agagatcatattttggacttcattgcttactatgtttcttgtgaaagggctaaagtctca
aaaagtaccctaagtcagattcttgaatacttgacttcagagactgattcctcacataat
gcatctgagaatgatgaaacctcaaagagaagacaaaaacaacttgttacacttcttgaa
gtattgccagagcatgaatgggatgctccttacttgttacatttatgtgagaaggctcag
tttcaccaggtttgcggcttaattcattctatcagacatcagtatcttgctgctttggat
agttatataaaagatgttgatgagccaattcatgccttctcgtttattcatgacatgctg
caacaactgggcaacaaagattctgatgctttccggtctgcagtcatctctcgaattcct
gatctagccaaattaagccgggaagaaactttctttatggttattagccattttggagaa
aaattccaacacattttgtctgagctacgctctcatccaaaaagcctctttctttaccta
aagacactcattgaggttcaatcaagtggtagcctcaaattttcttccatgagaaatgaa
aatgttttagaatttccttctctaagaaagggaatgcatcagtcactaaagattcaagcc
tacctggaaagtctgtctaaatttccaaaagttatgcaaaactatccagttcatgtgact
gacgaaatgatggagttatatcttgagcttttgtgtcagtatgaacgtaactcagtttgc
aaattcttggagagtcttgaaagctatagggtggaacactgtttacgtttgtgcctggaa
catggcattacggatgcagctgctttcttgtatgaaagggttggggacgttggaagtgca
ctttccctgttactttctacccttaatgataagtttattctacttgatgcatccattgag
aaggagctttgtggtgctcgtttgaagcattttaataatcttttagagacaaaagaggtc
aatgacatacttgaaatggtgcactgctctatctcgctgtgccagcggaatagcccgagg
cttgatccttacgagtctgaatgcctttggtttgagttgcttgattcgttttgtgaacct
ttaatagattcatttaatgataaagtggaatatgagggagataagagtgttggaatttca
gtcaattcaatgggaaatctaaaggatgaaggggcttgcagaatcaagtggaaagtctca
aagtcccatcagaatgctgaagttcttaggagattgctctcattctttattaaagagatt
gttgagggaatgattggatatgttcgcttaccaacaatcatgttaaaactgctttctgaa
aatggtagccaggaatttggagattttaaacttaccatcatggggatgcttggaacctac
gattttgaaagaagaattttggacactgccaaagccttgattgaggatgatacgtactat
accatgagcttactcaagaggggggcttctcatggttatgcccctcggagccttacatgt
tgtgtttgcaattgccttctatccagaagttctagcattcaaattttcagttgtggtcat
gcaatgcatctgcactgtgaacttccagaaaatggtacgtcctcgaaaggttcatcggtt
ggatgtccaatttgtatgcctagaaagaattctcagaggtcaagaagcaaatccatgtca
tcagagaatggattagtgagcaagacttcgaaatctcagcaaggacatgggcccgcaaat
gctttacatctacatgataatgattttcttgacatctccttcggacaccaccctgtttca
aggtttgagctcttgagtaatcttcagaaagagcagaggccggcacatgtagaacaaatg
cctaagttgaggctagcaccgcctgctctttaccatgaaaaggtaaacaaaaggatagaa
ttccaaacaggagaaagctcatcgaaagtggaaaaaccaagcaggaacagacagttgagg
gacataaaagtgaagggatcagcaataaggttccccctgaaatcaaatatatttggcaag
gagaagattgttaagcgttaa
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