Ipomoea triloba (trilobed morning glory): 115998531
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Entry
115998531 CDS
T07384
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115998531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
itr03021
]
115998531
Enzymes [BR:
itr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115998531
Transcription machinery [BR:
itr03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
115998531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
StiP
Motif
Other DBs
NCBI-GeneID:
115998531
NCBI-ProteinID:
XP_031093974
LinkDB
All DBs
Position
12:17402154..17421171
Genome browser
AA seq
1683 aa
AA seq
DB search
MLQAVEGASEAVEAVTFSFMTAKEVRRHSVMKVTNPNLLDLVGCPTPGGLYDPALGPSDE
RAQCKSCGQRSFHCPGHCGHIDLVSPVYNPLLFDMLHNLLQRTCLFCFHFKASRREVENC
ASQLRLIAKGDIIGAKQLGEASSEAKQLGEEFSNDYIDTDPVDCEGSHMSGLTGDYGSQD
HFDHNKQQPYWDNFQFTEAMAVLNKFLKPKPTKCSKCKAKNPKISKPTFGWLHMAGISNT
VLRENIIGGHKLEGWSTGGAKENITSEVVNDFETAETNSFLTTDGVENSMTPRSREDTVY
HELEKQKRILSGPLLPSQVRDIIKLLWENEASICSFICDIQSQNLNKPDKVAGHSMFFLE
AVLVPPIKFRPPAKGGDSVMEHPHTVMLNKVLQSNIALGNAHVNTTERSKIINRWMELQQ
SVNVLFDSKTAMAQGQKDAGTGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVN
EIGIPPYFALRLTYPERVTPWNVAKLRDAIINGPEIHPGALSYSDRVSTVKLPLNRKMRV
AVSRKLPSSRGVVTQSGKNSEYEFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVL
KGEKTLRMHYANCSSYNADFDGDEMNVHFPQDEVSRAEAYNIVNANEQYIVPTKGDTVRG
LIQDHIVSAVILTMKNTFLTLDEFNQLLYGSGVFMAGHGSFSGDRSRKVSTVDSESFLQP
VLPAVWKPKPLWTGKQVITSILNHLTRGFAPCTIRNKGKVPEKYFSKDKDNTADNKFIIW
KNEFVRGVLDKAQFGKFGLVHTVQELYGSNIAGALLSAFSRLFTIFLQTHGFTCGVDDLI
ILPDYDSRRKEHLEGNDVGEEVHANFVKFKPGEIGPVELQLEIEKAISTDKENAVAFLDM
KMKNKLNQKAEKMDKDLLQKGLLRPFPKNCISLMTVTGAKGSTVNFQQISSYLGQQELEG
KRVPRMVSGKTLPCFPPWDFTARAGGFISDRFLTGLRPQEYYFHCMAGREGLVDTAVKTS
RSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGIDVHRTSFLKNFKALQKNEE
TIRQKFHPARQFNSYIEKLPNGLEERVKKFWMERKAKLDEKSKKSLAKHVQEEHLEKQVE
QLTADKKKLASFLKLVEQKYLFSLVQAGEPVGVIAGQSIGEPSTQMTLNTFHLAGRGEMN
VTLGIPRLQEILMTASDVIKTPFLSCPFRGWTSRDDAQSLLAKVNKITVADMIESMEVHL
LPISIHNKNISQVYKLIVKLKKHDFVSLEDCKYTLKSAFLRELEDAIENHLSLLSKISGI
KNFKSSAQSVASNETDENASGAKSQEDMADDDDGDEEDDRTEDLGSDAQKRKQQATDEMD
YDDGSDNELSEMKNDETDDVNSREEEAGDDDDEDDELRESSKPKSSEKKTKSTTKVKRKK
EIFVKKESDRAIFVGTKGSCFEVQFRFTNEPHILLAQVAQKTAKKVYIKSSGKIHNCRMV
KFDVDENTVLWDGEKKEKAKRLQNNESKNAPFYWALKAAGVDFGAFWELQDVLDVNRIYS
NNIHAMLQTFGVEAARASLIREVKTVFGIYGVEIDFRHLSLIADYMTHNGGYQPMSRHGR
IADSLSPFLKMSFETASKFIVEAASHGMTDNLEAPSSRICLGLPVKMGTGSFDLMQKLEI
DAQ
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaagcagttgagggtgcgtctgaggccgttgaggccgttactttcagtttcatg
acggccaaagaggtacggcgccacagcgtaatgaaggttaccaatcccaatcttcttgat
ttggtggggtgtcctactccagggggtttatacgacccagccttgggtccttctgatgaa
cgtgctcagtgtaaatcatgtggtcagcgttcatttcactgtccaggccactgtggtcat
attgatcttgtttctcccgtctacaatccattgctgtttgatatgctgcataatcttttg
caaagaacatgcctattttgctttcattttaaggcaagcaggagagaggttgagaactgt
gcctcccaattgagattaatagcaaaaggtgatattataggggccaaacaattaggtgaa
gcatcatcagaagccaaacaattgggtgaagaattttcaaatgactacattgatactgat
cctgtggactgtgagggaagccatatgtcaggccttactggtgattatggttcacaagat
cattttgaccataataaacagcaaccatattgggacaattttcagtttaccgaagctatg
gcagtgttgaataaatttctaaagccaaagcccactaagtgcagcaaatgcaaagcaaag
aatccaaagatcagtaaaccaacttttggatggcttcatatggctggcatttcaaacaca
gtacttcgagaaaatattattggaggtcataagttggagggatggagcacaggtggagcc
aaagaaaacattacttctgaggttgtgaatgactttgaaactgctgaaaccaactcattc
ctgactacggatggagtagaaaattctatgacacccaggagtcgtgaagatactgtgtat
catgagttggaaaaacagaagcgtattctttcaggacctcttttaccttctcaggtcaga
gatattataaagctcttgtgggaaaatgaagcttctatctgctcttttatctgtgacatt
caaagccagaatcttaataaacctgacaaggtagcagggcactctatgttcttcttggag
gctgttcttgtcccacctatcaaattccgtccacctgcgaaagggggagactctgtaatg
gagcatccacatactgttatgttaaacaaggtccttcagtcgaatatagccttggggaat
gctcatgttaacactactgaacgttctaagatcatcaaccgatggatggaacttcaacaa
tctgtaaatgttttatttgatagcaaaactgcaatggctcaaggtcaaaaagatgctggt
actggcatatgccaattgctggaaaagaaagagggtatcttccgccagaaaatgatgggg
aagagggtcaattttgcatgccgatctgttatatctccagatccttatttggctgtcaat
gaaattggtatcccgccttattttgctctccggctaacttatccagagagagtgactcca
tggaatgttgcaaaattgagggatgctattatcaatggccctgagatccatcctggagct
ttgtcatattctgatagagtatccacagttaagctgccactaaatagaaagatgcgtgta
gcagtatctcgaaaattgccttcttctaggggcgtggtaacacaatcagggaagaacagt
gagtatgaatttgagggaaaagttgtataccgacacttgcaggatggggatattgtgctt
gtcaataggcagccaacacttcacaaacccagcataatggcacatgtagttcgtgttttg
aagggggagaaaacgcttcgtatgcattatgctaattgcagctcttacaatgctgatttt
gatggtgatgaaatgaatgtccattttcctcaagatgaagtttctcgtgctgaagcctat
aacattgtaaatgctaatgaacaatacatcgttccaacaaagggtgatactgttagaggc
ctgattcaggatcatattgtaagtgctgtcattcttacaatgaagaatacatttttaact
cttgatgagttcaaccaacttctctatgggtctggtgtgttcatggcggggcatggttca
ttttctggagatcgttctcggaaagtttcaacagtagactctgagagttttctgcagcct
gtattgcctgctgtgtggaaaccaaagcctctttggactgggaagcaggtcattacttca
attctaaaccatctgacaagaggtttcgcaccttgtaccatcagaaacaaagggaaagtt
ccggagaaatacttctcgaaagataaagataatactgctgataataagtttatcatttgg
aaaaatgagtttgtacgtggtgtacttgacaaggcacagtttgggaagtttggtttggtc
cacactgttcaggagctttatggttcaaacattgcgggagcgttgctctctgcttttagt
cgattatttaccattttcttgcagactcatggcttcacatgtggagtggatgaccttata
atattgcctgactatgactccagaaggaaagagcatcttgaagggaatgatgttggtgaa
gaagttcatgctaattttgttaagttcaaacctggagaaataggtcctgtagaactccag
ctggaaattgaaaaagctattagcacagataaagaaaatgctgtagctttcttggacatg
aagatgaaaaataaactgaaccaaaaagcagaaaagatggacaaagatttgcttcagaaa
ggattattaagaccgttccccaagaattgcatctctcttatgacagtcactggggctaag
ggtagtacggttaattttcaacaaatatcatcatatcttggccaacaagagttggaagga
aagcgagtgcctcggatggtttctgggaagactttgccatgctttcccccctgggatttc
actgccagggcaggaggctttatcagtgaccgatttcttactggtctccgtcctcaggaa
tattactttcactgcatggctggtcgtgaaggattagtagatactgctgttaagacttct
cgcagtggatatcttcaaaggtgcttgataaaaaatcttgagagcctcaaagtttgttat
gattatactgtccgtgatgcagatggctcgatcatccaattttactatggtgaagatggt
attgatgtgcatcgaactagctttctcaaaaacttcaaggcacttcaaaagaatgaagaa
accattcgtcaaaagtttcatcctgcacgccaattcaattcttatattgaaaaattgcct
aatggacttgaagaaagggtgaagaaattctggatggagaggaaggcgaagttagatgaa
aaatcaaagaagtcattagcaaagcatgtgcaagaggaacatcttgagaagcaagtggag
cagctaactgcagataaaaagaagctagcatcatttcttaaattagtagaacagaagtat
ttgtttagtctggtgcaagccggggaacctgtaggtgtaatagctggtcagtccataggt
gaaccatcaactcagatgacacttaacactttccatcttgctggccgtggggaaatgaat
gtcacacttggtattccacgtcttcaggagattttgatgacagcttctgatgtgattaag
actccttttttgtcctgtcccttccgtgggtggacatcaagggatgatgcccagtccctt
ctagcaaaagtgaataagatcactgttgcagacatgattgagagcatggaagtccatcta
ttgccgatatcaattcacaacaaaaacatttctcaagtttacaagcttattgtgaagctc
aaaaaacatgattttgtctcgttggaagattgcaagtataccctcaaatctgcgtttttg
agggagttggaggatgcaattgaaaatcatttgtccttgctttctaaaattagtggcata
aaaaatttcaaatccagtgctcagtcagttgcatcgaatgaaacagatgaaaatgcctct
ggtgccaaatctcaagaagatatggctgatgatgatgatggtgatgaggaggatgataga
actgaggatcttggttctgatgcacaaaaaagaaaacagcaagctacagatgagatggat
tatgacgatggatctgacaatgagctttctgaaatgaaaaatgatgagactgatgatgtc
aatagtagggaggaagaagctggagatgatgatgatgaagatgatgaactgagagaatca
tcaaagcctaaatcaagtgagaaaaagaccaagtctacaactaaagtaaagcgaaaaaag
gaaatctttgtgaaaaaggaatctgacagggctatttttgtgggaacaaaagggtcatgc
tttgaggtccagttcagatttacaaatgaacctcatattttactagcacaggtggctcag
aagactgcaaagaaagtttacatcaagagttccgggaagatccataattgcagaatggtt
aaatttgatgtggatgaaaatacggtactttgggacggggagaaaaaggaaaaagccaag
aggcttcagaacaatgaaagcaaaaatgctcccttttattgggcactgaaagctgctgga
gtggattttggtgcattttgggaattgcaggatgtacttgatgtgaatcgaatatacagc
aataatatccatgccatgctgcaaacatttggggtcgaagctgccagggcaagtctcatc
agagaggtgaagactgtgtttggtatttatggtgttgagattgattttcgccacttaagc
ctgattgcagactacatgacccacaatggtggctaccaaccaatgagcagacatggaaga
atagctgattcattgtcaccctttttgaagatgtcttttgaaaccgcgtccaaatttata
gtagaagcagcatctcatggtatgacggacaacttggaagcaccgtcatccagaatatgc
cttggcttacccgtcaaaatgggtactggttcttttgacttgatgcaaaagttggaaatt
gatgcacaataa
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integrated database retrieval system
