Ipomoea triloba (trilobed morning glory): 115998556
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Entry
115998556 CDS
T07384
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115998556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
115998556
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
115998556
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-GeneID:
115998556
NCBI-ProteinID:
XP_031094012
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Position
12:12593807..12599049
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AA seq
422 aa
AA seq
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MGGPAVPFHISTIPKPQDEYRILVNNLNEPFEHVWLETSEDESRFIHPLEKFSSLDFLDT
AVAASDPVKPPSLDHTPFKLVEKLNDLKELVLKLQGVDEFAVDLEHNQYRSFLGITCLMQ
ISTRTEDFVIDTLKLRIYVGPYLREIFKDPTKRKVMHGADKDILWLQRDFGIYICNLFDT
GQASRLLKMEKNSLAYLLQHFCGIMAKKEYQSADWRLRPLPSEMLRYAREDTHFLLYIYD
VMKMKLLSLSVNTESSSSPLAEVYKLSYDISMQLYTKDIWTDKSYLNIYGLPEAGFNAKQ
LAVVAGLSEWRDAVGRTADESTGYILPNRALLDIAKEMPLTSYRLLQLVKSKYPHNPSIE
NNVDYIVNLIRNSIQASAAYEAGVEYLKEMSRGKNSDVNATSNINGGGGGDTKDAKTSHH
KV
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgggtggtccggcggtgccgtttcatatatccactattcccaagccgcaagacgagtac
cggatacttgtgaacaacttgaacgagccgttcgaacatgtgtggttggagaccagcgag
gatgagtccaggttcatacatcccctggagaagttttcttccctcgattttcttgacact
gctgttgctgcttccgaccctgtcaaacctccttctttagatcacactccatttaaacta
gtggagaagctcaacgatctgaaggagttagtgctcaagttgcaaggagtggatgagttt
gcggtcgatttggagcataatcaatatcgatcctttttaggaattacatgccttatgcaa
atatctactagaactgaagattttgtcatagacacactgaaacttcgcatttatgttggt
ccttatctaagagaaatttttaaagatccaaccaaaagaaaggtcatgcatggagcagat
aaggatattctgtggcttcaacgagattttggtatatatatctgcaatctgttcgacact
gggcaggcctcaaggcttttgaaaatggagaaaaacagcctggcatatttgctgcagcat
ttttgtggaattatggcaaagaaagaatatcagagtgcagattggaggttgcgcccactt
ccttctgagatgctcagatatgccagagaagatacacactttctattgtacatttatgat
gtcatgaagatgaagctgctttctttatctgtcaacactgaatcaagcagttctcctttg
gcagaggtatacaaacttagctatgatatatccatgcagctgtatacaaaagacatttgg
actgataagtcatatctcaatatatatgggttacctgaagctggattcaatgctaagcag
cttgcagttgttgcaggactgtctgagtggagggatgctgttggtcgtacagcagatgaa
agtactgggtatattttaccaaatagagcacttcttgacattgctaaggagatgcctctt
accagctacagattgctccagttggttaaatcaaagtacccacataacccatctattgaa
aataatgttgattatatagtcaatctcattaggaattcaattcaagcgtctgctgcatat
gaagctggtgttgaatacctgaaagaaatgtcgagaggaaaaaacagtgatgtaaatgca
acttcaaacataaacgggggtggcggtggggatacaaaagatgccaaaacctcacatcac
aaagtctga
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