Ipomoea triloba (trilobed morning glory): 115998582
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Entry
115998582 CDS
T07384
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52B-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
115998582
03041 Spliceosome [BR:
itr03041
]
115998582
03036 Chromosome and associated proteins [BR:
itr03036
]
115998582
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115998582
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115998582
mRNA cycle factors
Common to processing body (P body) and stress granule
115998582
Spliceosome [BR:
itr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
115998582
Chromosome and associated proteins [BR:
itr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
115998582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
115998582
NCBI-ProteinID:
XP_031094047
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All DBs
Position
12:complement(15176988..15181057)
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AA seq
598 aa
AA seq
DB search
MAGPWNGSYSESTRHTRASRVTYLPPHLRNSDTDTLPERFNRSARGGTARGRGHGRGGGQ
ARPRNPVLNAHSDWKFNDLQSEEDVGKGNVNAYDDVPVETSGKDIPKPVRSFSELEFCEA
LYENINRCKYVKPTPIQRYAIPVAMNGRDLMACAQTGSGKTAAFCFPIINGILSAGRVGF
RNSRPASPLALILVPTRELSCQIHEEAKKFSYETGLKIVVAYGGAPISLQLRILEKGVDI
LVATPGRLVDMMDKSRVSLREIKYLALDEADRMLDMGFERQVRRIVQDTEMPPPGKRQTM
LFSATFPAEIQSLASEFLSNHVFLSAGKVGSSTDLIVQKVEFVHESGKRDILMNLLQEQT
ANGTQGKSLTLVFVETKRGADALERWLLGNGFQAVAIHGDKEQMERERALRSFKSGRTPI
LVATDVASRGLDIPHVSHVINFDLPRSIDYYVHRIGRTGRAGKSGLATAFFSGKNAPLAK
DLVELMQGANQEIPTWLNEYAEKSYCGNGERVKSYGDKKFGGFDYGNTAAYDSFSENWSS
QYTETAPPYYPCTADSNPFTYGAPFAAGYYVHPEMGSYSAAPSNYGFEQASITADDWN
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggctggtccttggaacggttcttattccgagtccactcgtcatactcgcgcttctcgg
gtcacctaccttcctccccatctacgcaactccgataccgatacccttcctgaacgtttc
aaccgttccgctcgtggcggaacggcccgggggagaggccatggtcggggaggtgggcaa
gccaggccgagaaatccggttttgaacgctcactcggactggaaatttaatgatctccag
agtgaggaagacgtggggaagggcaacgtgaacgcgtacgacgacgttcctgtggagacg
agcgggaaggatattcctaaaccagtgaggtcgttctctgagcttgagttctgtgaggct
ctctacgagaatatcaacagatgtaagtacgttaagcccactcctattcaaaggtatgct
attccggtggcgatgaacgggcgggacctgatggcttgcgcacagactggttccggcaag
acggccgctttttgcttccccattatcaatgggattctcagtgctggtagagtagggttc
aggaattctagacccgcttctcccctcgccctaattctggttccaaccagagagctttct
tgtcagatacatgaagaggccaagaagttttcttacgagacaggattaaagatcgtggtt
gcatatggaggggcaccaataagtctacagctgcgcattctggaaaagggtgttgacatc
ttagttgctactcctggacgattagttgatatgatggataaatcaagagtttccttgaga
gaaatcaaatatttggctttggatgaggctgaccggatgctggatatgggatttgagcgc
caagtccggaggatagttcaggatacagagatgcctccaccgggcaagaggcagacaatg
ctttttagtgctacatttccagctgagatacagagcctagcatcggagtttctttcgaat
catgtattcctatctgctggaaaagttggatcaagcactgatctaattgttcagaaagtt
gaatttgttcatgagtcaggcaagagggatattttgatgaaccttcttcaagagcaaact
gcaaatggaactcaaggaaagagtctgacactagtatttgtggagaccaaaaggggagca
gatgcattagaacgctggctgttaggaaatggtttccaagctgttgccatacatggtgac
aaagagcaaatggaaagggaaagagcactaagatcattcaaaagtggacgtactccaatt
ttagttgctacagatgttgcttctcggggcctggacattccacatgtttcccatgtgata
aattttgatttgccaaggagcatagattactatgttcacaggataggtaggactgggcgt
gctggtaaatctgggttagcaactgcatttttcagcggtaaaaatgcgcctcttgcaaag
gatcttgttgaattaatgcagggggcaaatcaagaaatccctacatggcttaatgaatat
gctgagaaatcttattgtggcaatggtgagagggtaaagagctatggtgacaaaaaattt
ggtggttttgattacggaaacactgctgcttatgatagctttagtgagaattggtctagc
cagtatactgaaaccgctccgccttactatccctgcactgctgacagtaatccatttacg
tatggtgctccttttgctgctggttattatgttcatcccgaaatgggctcgtattctgct
gctccgagcaactatggtttcgagcaagcatccatcactgcagatgactggaattag
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