Ipomoea triloba (trilobed morning glory): 115998969
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Entry
115998969 CDS
T07384
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115998969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
itr03041
]
115998969
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115998969
Spliceosome [BR:
itr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
115998969
Complex C
U5 SnRNP specific factors
115998969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
T2SSE
AAA_11
INT_SG_DDX_CT_C
Motif
Other DBs
NCBI-GeneID:
115998969
NCBI-ProteinID:
XP_031094510
LinkDB
All DBs
Position
12:complement(18872166..18880577)
Genome browser
AA seq
2174 aa
AA seq
DB search
MSHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKGFGDRVF
KGKPAELEEKFKKAKKKKEREPLSSEPIPTRQSKRRRLQEESVLTATEEGVYQPKTKETM
AAYELMLNTIQQQLGGQPLNIVSGAADEILAVLKNDNIKNPEKKKEIEKLLNPIPNNVFD
DLVSIGKRITDYQDGSDALVSAAANGDDALDDDVGVAVEFEENEEEEEESDLDMVPEDEE
EDDGLEENGAGAMQMGGGIDDDEMLEADEGMSLNVQDIDAYWLQRKISQAYEQQIDPQQS
QKVAEDVLKILAEGDDREVENKLLLHLDYERFSLVKYLLRNRLKVVWCTRLARAEDQDMK
KKIEEEMMELGPDHTAILDQLHATRASAKERQKNLEKSIREEARRLKDETSGDGDRGRRM
ISDRDVESGWLQGQRQLLDLDNLAFHQGGLLMANKKCELPLGSYRNHKKGYEEVHVPALK
PKPLAEDEKFVKISSMPEWAQPAFRGMTQLNRVQSKVYETALFTPENILLCAPTGAGKTN
VAMLTILQQIALNRNEDGSFNHNKYKIVYVAPMKALVAEVVNNLSNRLQEYGVNVKELSG
DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI
VARTVRQIETTKEHIRLVGLSATLPNYDDVAVFLRVDLQKGLFHFDNSYRPVPLAQQYIG
VTVKKPLQRFQLMNDVCYEKVIAVAGKHQVLIFVHSRKETAKTARAIRDTALGNDTLGKF
LKEDSASREILQSHTELVKSNDLKDLLPYGFAIHHAGLVRADRQIVEELFADGHVQVLVS
TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQFDTYGEGIIIT
GHSELQYYLSLMNQQLPIESQFISQLADQLNAEIVLGTVQNAKEACKWLLYTYLCIRMVR
NPSLYGLAADALKNDITLEERRADLVHSAATLLDKNNLIKYDRKSGYFQVTDLGRIASYY
YITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKIELAKLLERVPIPVKES
IEEPSAKINVLLQSYISQLKLEGLSLTSDMVFITQSAARLMRALFEIVLKRGWAQLAEKA
LKWCKMISKRMWSVQTPLRQFHGIPNEILMKLEKKDLAWERYYDLSSQELGELIRYPKMG
RTLHKYIHQFPKLNLSAHVQPITRSVLRVELTITPDFIWDDKVHGFVEPFWVIVEDCDGE
YILHHEYFMLKKQYSDEDHTLNFTVQIYEPLPPQYFIQVVSDKWLGSQTVLPVSFRHLIL
PEKYPPPTELLDLQPLPVTALRNPAYETLYQEFKHFNPVQTQVFTVLYNSDDNVLVAAPT
GSGKTICAEFAILRNHQKGSDSVMRAVYIAPIEALAKERYSDWKKKFGEGLGMRVVELTG
ETATDLKLLEKGQVVISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGPVLEVI
VSRMRYIASQLDKKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGV
DIANFEARMQAMTKPTYTAIVQHAKNGKPAIVYVPTRKHARLTAVDLMTYSSVDSGERPM
FLSQSPNEVEPFVESIKEPMLKETLKYGVGYLHEGLTSTDQDIVKTLFENGWIQVCVMSS
SMCWGVPLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA
PRKDYYKKFLFEAFPVESHLQHYLHDNLNAEVVSGVIQNKQDAVDYLTWTFMYRRLTQNP
NYYNLQGVSHRHLSDHLSELVENTLSDLEASKCVAVDDDFLLSPNNLGMIASYYYINYTT
IERFSSSLTPKTKLKGLLEILTSASEYQQLPIRPGEEELIRRLINHQRFSFENPKYSDPH
VKANALLQAHFARQVVGGNLASDQQEVLLSANRLLQALVDVISSNGWLNLALLTMEVSQM
VTQAMWERDSMLLQLPHFTKDLAKKCQENPDKCIETVFDLLEMEDDERRELLQMSDSQLM
DIARFCNRFPNIDLTYEVVDGESVSAGGDDISVQVTLERDLEGRTEVGPVFAPRYPKTKD
EGWWLVVGDPKSNQLLAIKRVSLQRKSRVKLDFAAPAEPGNKTYTLYFMCDSYLGCDQEY
TFTVDVKEAGAVDD
NT seq
6525 nt
NT seq
+upstream
nt +downstream
nt
atgtcacatttggggggtggtgcagaggcacatgcacgcttcaaacagtatgagtacaga
gctaattcaagtcttgtcttaactactgattctcgccctcgggatacccatgagcctact
ggtgagccagagtccctttggggcaaaattgatcctaaaggctttggtgatcgtgttttc
aagggcaaacctgctgaacttgaggagaagtttaagaaggcaaagaagaagaaggagaga
gaaccactttcatctgaacccattcccactagacaaagcaaaaggaggcggcttcaggag
gaaagtgtgcttacagccaccgaagaaggtgtttaccaaccaaaaactaaagaaaccatg
gctgcatatgaactaatgctcaatactatccagcagcagcttggagggcagccactgaat
attgtcagtggagctgcagatgagattctagctgttctaaaaaatgataacattaagaat
cctgagaagaaaaaggagatagagaagttactgaatccgatcccaaacaatgtatttgat
gacttggtttccattggcaagcgcattactgattatcaagatggcagtgatgcattggtg
tctgctgctgccaatggtgatgatgctctcgatgacgatgttggtgtagctgtcgagttt
gaggagaatgaggaggaggaggaggaaagtgatcttgatatggtgccggaggatgaagag
gaggatgatggattggaagagaatggtgctggtgctatgcagatgggtggaggaattgat
gatgatgaaatgctggaagctgatgagggtatgtccttgaatgttcaggacattgatgcg
tattggctacaaagaaagatctctcaagcttatgagcagcagattgacccgcagcaaagc
cagaaggttgctgaagacgttcttaaaatccttgccgagggtgatgatcgggaagtggag
aacaagttgctgttgcatcttgattacgaaagatttagtctcgttaaatatttattgcgg
aacaggcttaaggtagtttggtgcactcgcctagcaagagctgaggaccaagatatgaag
aagaaaattgaggaagagatgatggagttagggccagatcatactgctattttggaccag
ttgcatgccaccagggccagtgcaaaagagagacagaagaatttggagaagagcattaga
gaagaggcccgccggctgaaagatgagactagtggggatggtgataggggacggagaatg
atttctgatagagatgttgagagtggttggttgcaggggcagcgacaattacttgacctt
gataaccttgcatttcatcaaggtgggctgttgatggcaaacaagaagtgtgagcttcca
ttagggtcctatagaaatcataaaaaggggtatgaagaagttcatgttccagctttgaag
ccaaaaccgttggctgaagatgaaaaatttgtaaaaatatcctccatgccagagtgggca
caaccagctttcagagggatgacccagttgaacagggtccaaagcaaagtatatgagact
gccctgttcacccctgagaatattttgttgtgtgctccgactggagcagggaagacaaat
gttgctatgctcactatacttcagcagattgcattgaacagaaatgaggatgggtctttc
aaccataacaaatacaagatagtttatgtagcaccaatgaaggcacttgttgctgaagtt
gttaacaatttgagcaatcgtctgcaggagtatggtgtcaatgtgaaagagctaagtggg
gatcaaacattgactaggcaacaaattgaagagactcaaattattgtaacaacaccagag
aaatgggatatcattaccagaaagtcaggcgaccgcacctacacacaacttgtaaagttg
cttattattgatgaaatacatctcctacatgacaacagaggtccagttctggaaagtatt
gttgcaagaacagtgaggcaaattgaaaccacgaaagagcatattcgccttgttgggtta
tcagctactcttccaaattatgatgatgtggcagtgtttctgagggttgatctgcagaag
ggacttttccattttgataatagctataggcctgttccactggctcaacaatatatagga
gttactgttaaaaagccattgcaaagattccaattaatgaatgatgtgtgttatgagaag
gtaattgctgtggctggcaaacatcaggttcttatttttgtccactcaaggaaggaaaca
gctaaaactgctcgtgcgattcgtgatactgctcttggtaatgatactctcggtaaattt
ctgaaagaggacagtgcaagtcgcgaaattctccaatcacatacagagctggtcaagagc
aatgatctcaaagatctgttgccctatggttttgcaattcaccatgcggggttggtcagg
gctgatcgccagattgttgaggagctttttgctgatggacatgttcaggttttggtttct
acagcaactctagcttggggtgtaaacttgcctgctcatacagtgataattaaaggcacc
cagatttacaatcctgagaagggagcttggactgaactcagtcccctagatgtcatgcag
atgcttggccgtgctggaaggcctcaatttgacacctatggggagggcataattataaca
gggcacagcgaactgcagtattatttgtctttaatgaatcagcagcttccaattgagagc
caatttatttcccaattggctgatcagttgaatgctgaaattgtccttggtacagtgcag
aatgcaaaagaggcttgcaagtggctcctctacacttacctctgtattcgcatggtacga
aatccctctctttatggcttggcagctgatgctctgaaaaatgacataacattggaagaa
aggcgagctgatctggttcattcagcagctacactgttggacaaaaataatctgatcaag
tatgacaggaaaagtggatatttccaagttacagacttgggtcgcatagctagctattat
tacataactcatgggacaatatcaacatacaatgaacatttgaagcctacaatgggtgat
attgagctttgtcggctgttctcacttagtgaggaatttaaatatgttacagttagacaa
gatgagaagattgaattggctaagcttctagaacgtgttcccattcccgtcaaagagagt
attgaggagcctagtgccaagattaatgttttgctccaatcatatatttcacaactgaag
cttgaagggttgtctttaacatcagacatggtcttcataactcagagtgctgcacgcctt
atgcgagcgctttttgagattgttctgaaaagaggttgggcccagctagctgaaaaggct
ttgaagtggtgcaaaatgattagcaagaggatgtggagtgttcagactccacttcgccag
ttccatgggattcctaatgaaatcttaatgaagttggagaaaaaagatttggcttgggag
aggtattatgatctttcctcccaagagttgggagagctcatccgttatccaaaaatggga
cgaacacttcacaagtacattcatcaattcccaaagcttaacctttctgcacatgttcaa
ccgatcactcgctcagtcttgagggtggagctaacaataacaccagattttatatgggac
gacaaagttcatggatttgtagagcctttctgggttattgtggaagactgtgatggggag
tatatccttcatcacgagtactttatgctgaagaagcaatacagtgatgaggaccacact
ttgaatttcacagtccaaatttatgagccattgcctcctcagtatttcattcaagtggta
tctgataagtggttaggatctcagactgttctgccagtttccttccggcatcttattttg
ccagaaaaatatcctcctccaacagagctattagacttgcaaccccttcctgtgactgct
ctgagaaatcctgcatatgaaaccctttatcaggaatttaaacatttcaacccagtccaa
actcaggtctttactgtcttgtacaactctgatgacaatgtattggttgcagcaccaacg
ggtagtgggaagaccatatgtgcagaatttgccattttgaggaatcaccagaaaggatct
gacagtgtcatgcgtgcggtgtatatagctccaatagaggctcttgctaaggagcgttat
agtgattggaagaagaaatttggtgagggcctaggtatgagagttgttgaactcactggg
gagacagctactgaccttaaacttcttgagaagggacaagttgtcattagcacacctgag
aaatgggatgctttatctcgtcgttggaaacagcggaaacatgtacagcaagtcagcctt
ttcatcattgatgagctccacctgattggtggtcagggtggtcccgtcttggaagtgatt
gtctccaggatgagatatattgcaagtcagctagacaaaaagatccgtattgtagcttta
tcaacttctctggccaatgccaaggatttgggagaatggattggggctacctctcatggg
cttttcaacttccccccgggtgtcaggcctgtgccccttgaaatacacattcaaggcgtt
gatattgccaattttgaggctaggatgcaagctatgacaaagcccacatatactgcaatt
gtccagcatgcaaagaatgggaaacctgctattgtttatgttcctacaagaaagcatgca
cgacttactgctgtggatttgatgacttattcaagtgtggacagtggagagagaccgatg
ttcttatcacaatctccaaatgaggtggagccttttgttgaaagcattaaagaacctatg
ttgaaagaaacattgaagtatggggtaggttacttgcatgagggcttgactagcactgat
caagatattgtgaagacactgtttgaaaatggatggatccaagtatgtgtcatgagcagt
tcgatgtgttggggagtacccctgtccgcacacctggtggtggttatgggaacgcagtac
tatgatggcagggaaaatgctcatactgattacccagtcactgatttgttgcagatgatg
ggtcatgccagtcgacctcttttagacaactcaggaaagtgtgtcattctttgccatgca
ccacgaaaagattactacaagaagttcttgtttgaagcattccctgttgagagccatttg
caacactatctccatgataatttgaatgctgaggtggtttctggagtaattcaaaacaag
caggacgcagttgattacctgacctggactttcatgtatagaaggctcactcagaaccca
aattactacaatcttcagggtgttagtcacaggcacctgtctgaccacctttcagaattg
gtggagaacacattaagtgatctggaagccagcaaatgtgttgctgttgatgatgacttc
ttactttcaccaaataatcttgggatgatagcatcatattactatattaattatacaacc
atagaacgatttagttcttctttaacacccaaaacaaagctcaagggtttactggaaatt
ctgacttcggcttcagagtaccaacagcttccaattcggccaggtgaagaggagttgata
agaaggttgattaatcaccagcgtttctcttttgagaatccaaagtactcagatccccat
gtcaaggctaatgctctactgcaggcccactttgctaggcaggtggtaggtggaaatctg
gcttctgaccaacaagaggtgcttctttctgctaataggcttcttcaggctctggtggat
gttatttctagtaatggttggctcaaccttgcactccttactatggaagtgagccaaatg
gtgactcaggccatgtgggaacgtgattcaatgttgctccaactcccacatttcactaaa
gatttagccaagaagtgtcaggagaaccccgacaagtgcattgagacagttttcgatttg
ctggaaatggaagatgatgagaggcgtgagctgttgcagatgtctgactctcagttgatg
gacattgctcgcttttgtaaccgctttcctaacatagacttgacatatgaagttgtagac
ggggagagcgtgagcgctggaggggacgacatcagtgtgcaggtaacacttgagcgggat
cttgagggtagaacagaggttggaccagtttttgcaccaaggtatcccaagacgaaagat
gaaggatggtggctcgtggttggtgatcccaaaagcaaccagcttcttgccatcaagagg
gtgagtctccaaaggaagtcgagggtcaaacttgactttgctgctcctgctgaacctggg
aacaagacatacacactttatttcatgtgtgattcttacctgggatgtgaccaggagtat
acgtttaccgttgatgtgaaagaggcaggggctgttgatgattga
DBGET
integrated database retrieval system
