Ipomoea triloba (trilobed morning glory): 115999060
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Entry
115999060 CDS
T07384
Name
(RefSeq) DNA repair protein RAD4
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
115999060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
itr03400
]
115999060
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
115999060
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
115999060
NCBI-ProteinID:
XP_031094662
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Position
12:complement(998413..1005603)
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AA seq
989 aa
AA seq
DB search
MRTRNQSRRLNQSTAEAVVGKHHIDSERQSSSTFEADENETLGNISRDAVRKLLKKAKTR
RGFRGSDADDAYLRRCDSTGKHLSESRGKDKQPTGTAFDANSDGMETMQHISTQVKDGGT
NSQQPNPEIEDELDWEDGIIPTSNSENNVEQPTTNGVTVEFDVPEDAAKRKTIRRATAEE
KDLAELVHRVHLLCLLGRGRLIDFACNDPLIQASLLSLLPTHLLKMSDMPNLTAKALSPL
VNWFHKHFHVRGQSATEKSIHSAMRSTLESQEGSPEVVAALSVALFRALNITARFVSILD
VASLKPGVDKPDLSDQGHQDPRRKGSDIFNTSTLMVAGSSHPPESPEGHLASSDKGSVCK
SPSSDANKTKAGKSLRKKSKSSDSSLADTLKHRVLDQSTSEAQNDSSDTCPMQREQPKRK
GDLEFEMQLEMALSATAMESSRENFVPNVVEAHGTSSNHSPYKRMKKIKAEECSASSHGI
STAIGSKKIGAPLYWAEVYCSGENLTGKWVHVDAVNALVDGEQNVEAAAAACKIPLRYVI
AFAGNGAKDVTRRYCTKWYKIVSKRVNSLWWDAVLEPLKKLEAGAVDDLSHFKHEGSNGK
ESIKPLNGTCHPKQEQPLESTTLPLKFNSEALEECREKRYSQSSSRASVAASRSDLEDME
LETRALTEPLPTNQQAYRTHQLYAIERWLNKYQILYPKGPVLGFCSGHPVYPRTCVQTLH
TKERWLRDGLQVKANELPAKVLKRSQKQSKELVGEDDESAEGDPSGTTALYGRWQTEPLC
LPPAVNGIVPKNERGQVDVWSEKCLPPGTVHLRLPRIYPVAKRLEIDYAPAMVGFDFRNG
RSVPVFEGIVVCAEFKDAILAAYAEEEERRHAEEKRKAEAQALSRWYQLLSSIITRQRLN
NCYANGGPSQSTINTPKPDSESSAKPGGSSSENQKMSPERKQESKPVTVPAETDHHEHVF
LLDDQTFDEESSTRTKRCRCGFSLQFEEL
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgagaaccagaaatcagtccaggcgtctcaaccaatccactgctgaagcagttgtcggg
aagcatcatattgattcagaacgacaaagcagctctacttttgaagctgatgagaacgag
actcttggaaatatatctcgagatgcagtgaggaagcttctgaagaaagctaagacacgc
agaggatttcgaggctcagatgctgatgatgcttacctgcgccgatgtgattctacagga
aagcatttgagtgaatcacgaggaaaggacaagcagcctacaggcactgcatttgatgct
aattctgatggcatggagacaatgcaacatatttcaacacaagtgaaagatggagggaca
aattctcagcagccaaatcctgagattgaagatgaactggattgggaagatggaataatt
cctacttcaaattcagaaaataatgtagaacaacctacaaccaatggagtaactgttgag
tttgatgttccagaagatgctgccaagcggaagaccattcgtcgtgccactgctgaagag
aaggatttggctgagcttgtacatagagttcacttgctttgtttgctagggcgggggaga
ttaattgattttgcttgcaatgatcctctcattcaggcttctttactttcacttctcccc
acacacttgctgaagatgtcagatatgccaaaccttacagcaaaggctctatctcctctt
gttaattggtttcataaacatttccatgttagaggtcaaagtgccactgagaaatcaata
cattcagccatgagatccacccttgaatctcaggaggggagccctgaagtggttgctgcg
ttgtctgtggcactgtttagggctctgaacattacagctaggtttgtatccatcttggat
gtggcctccttgaagcctggtgtggataaacctgatttatctgatcaaggtcatcaagat
cctagaaggaaaggtagtgatatattcaacacctcaacattgatggttgctggatcaagt
catcctcctgaatctcctgagggacatctggcatctagtgacaagggcagtgtttgcaaa
agtccctcgagtgatgcaaacaaaactaaggctgggaagtcattgagaaagaaatctaaa
tccagtgattcatctcttgctgatactttgaagcatagagtattggatcagtcaacatct
gaggctcagaatgatagcagtgatacatgccctatgcagagagaacaaccaaaaagaaaa
ggagatcttgaatttgagatgcagttagaaatggcactttccgccacagcaatggaaagt
tctagggaaaactttgtcccaaatgtggtggaagcacatggtacttcatcaaatcattct
ccttacaaaagaatgaagaaaattaaagcagaagaatgttcagcatcttcccatggaatt
tctactgctattggatcgaaaaaaataggggcccccctgtactgggcagaagtctattgc
agcggtgagaacttgactgggaaatgggtacatgtggatgctgtaaatgcacttgttgat
ggagagcaaaatgtagaagctgctgctgctgcatgtaaaattcctttaagatatgttatt
gcttttgctggaaatggagctaaagacgtgacccgcagatactgcacaaaatggtacaaa
atagtgtcaaaaagagtaaactcactttggtgggatgcagtattggaaccattgaagaag
ttggaggcaggagcagtagatgatttaagccatttcaaacatgaaggttcaaatggaaag
gagagtataaagccattgaatggaacctgtcatccaaagcaggagcaaccactcgagagc
actaccttgcccttaaagtttaattcagaggcattagaagaatgtagggagaagagatac
tctcagtcctcttcaagggcttctgttgctgcatctaggagtgatctagaagatatggag
ttggaaactagggcattgactgaacctctaccaaccaatcagcaggcttacagaacccat
caattatatgctattgaaagatggcttaacaagtatcaaatactttacccaaaggggcct
gttctgggtttctgctctggccatcctgtatacccacgaacttgtgtccaaacactgcat
acaaaggaaaggtggctgcgggatgggctgcaagtgaaagctaatgaactccctgcaaag
gttctaaagcgttctcaaaagcaaagcaaagaactagttggtgaagatgatgagagtgct
gagggtgatcctagtggaactactgcactttatggaagatggcaaacagaaccattgtgt
cttcctcctgcagtcaatggcattgtccctaagaatgagcgtggtcaagttgatgtttgg
tctgagaagtgcctgccaccaggaactgtgcatttgagattgccaaggatatatcctgtg
gcaaaaagactagaaatagattatgcacctgctatggttggatttgacttccgcaatggg
cgttcagtccctgtatttgaggggattgtggtgtgtgctgagtttaaagacgcgatttta
gcggcatatgcagaagaagaagagagaagacacgcagaagagaagagaaaagcagaagca
caagccctttcaaggtggtatcagctcctttcctccataatcacgcgacagcgattaaac
aactgctatgccaatggcggaccgtcacaatccaccatcaacaccccaaaacccgacagc
gaaagctcagcaaaacctggtggtagtagtagtgagaatcaaaagatgtctccagaaagg
aaacaagaaagcaagcctgtcactgtacccgcagaaacagaccaccatgaacatgtattc
ctactggatgatcaaacttttgacgaagagagttccacacgaacaaaacgctgccgctgt
ggattctcactccaattcgaagagctgtag
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