Ipomoea triloba (trilobed morning glory): 115999905
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Entry
115999905 CDS
T07384
Name
(RefSeq) serine/arginine-rich splicing factor SR45a-like isoform X1
KO
K12897
transformer-2 protein
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115999905
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
itr01009
]
115999905
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
itr03041
]
115999905
Protein phosphatases and associated proteins [BR:
itr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
115999905
Spliceosome [BR:
itr03041
]
Common components
Common spliceosomal components
SR proteins
115999905
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
CoV_nucleocap
RRM_DEAH11
RRM_5
PRP38_assoc
RRM_occluded
PRR20
MAX_effector
Motif
Other DBs
NCBI-GeneID:
115999905
NCBI-ProteinID:
XP_031095714
LinkDB
All DBs
Position
12:1655734..1658503
Genome browser
AA seq
221 aa
AA seq
DB search
MADSPRKRYSPSPSPWEEKSRSRSRSRSRSRSWSRQRGRSRSRDRNDATNPGDTLYVTGL
STRVTERDLEEHFSKEGKVKSVFLVVEPRSRISRGFAFVTMDNDDDASRCVKHLNQSVLE
GRYITVEKSRRKRARTPTPGHYLGLKSSRGESYRGDRGDRGRYRGHNDYGYRRSPRRSPY
RGGRERDYSPRRSPYGGRSRRDRSRSYSPYRSLERNYARGR
NT seq
666 nt
NT seq
+upstream
nt +downstream
nt
atggctgattctcctcgcaaaaggtattcaccatctccttctccctgggaagaaaagtct
cgctctagatccaggtctaggtctcgctctaggtcatggtcaaggcaaaggggaaggtcc
agaagtcgtgacagaaatgatgctactaatcctggagacacactctatgtgactggttta
tctactagagtgacagaaagggatcttgaagagcatttctctaaggagggaaaggtaaaa
tcagtgtttttggttgttgagccacggtctcgcatctctcgtggttttgcttttgtaact
atggataatgacgatgatgccagtcgctgtgtcaagcacctcaatcagtcagttcttgaa
ggccgatacataactgtggagaagtcccgaaggaaacgggcaaggaccccaacacctggg
cattatcttgggctcaagagcagcaggggcgagagttatcgtggtgaccgtggagaccgt
ggaaggtaccgtggccacaatgactatggctatcgaaggtctccaagacgttctccatat
cggggtggccgagagcgagattattctcctaggcgttcaccatatgggggaaggtcaaga
agggatcggtcgaggtcatattctccttatcgcagtcttgaaaggaactatgctcgtggt
agatag
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