KEGG   Ipomoea triloba (trilobed morning glory): 115999923
Entry
115999923         CDS       T07384                                 
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b-like
  KO
K11088  small nuclear ribonucleoprotein D3
Organism
itr  Ipomoea triloba (trilobed morning glory)
Pathway
itr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:itr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115999923
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:itr03019]
    115999923
   03041 Spliceosome [BR:itr03041]
    115999923
   03032 DNA replication proteins [BR:itr03032]
    115999923
Messenger RNA biogenesis [BR:itr03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     115999923
Spliceosome [BR:itr03041]
 Complex A
  U1 snRNP components
   Sm proteins
    115999923
  U2 snRNP components
    115999923
 Complex B
  U1 snRNP components
    115999923
  U4/U6.U5 tri-snRNP components
    115999923
 Complex C
  U2 snRNP components
    115999923
DNA replication proteins [BR:itr03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     115999923
SSDB
Motif
Pfam: LSM SM-ATX DUF6897
Other DBs
NCBI-GeneID: 115999923
NCBI-ProteinID: XP_031095740
LinkDB
Position
12:complement(1945576..1948460)
AA seq 132 aa
MSRSLGIPVKLLHEATGHIVTVEMKSGELYRGSMVECEDNWNCQLESITYTAKDGRVSQL
EHVFIRGSKVRFMIIPDMLKNAPMFKRLEAKIKGKGTSLGVGRGRAIAMRAKAQAAGRGA
APGRGVVPPVRR
NT seq 399 nt   +upstreamnt  +downstreamnt
atgagtaggagcttggggatcccggtgaagcttctccatgaggcgacggggcacattgtg
acggtggagatgaagagcggcgagctctacagaggaagcatggtggagtgcgaggacaac
tggaattgccagctcgagagcatcacttacacagctaaagatggaagagtttcacaactt
gagcatgtttttattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaag
aatgctcctatgttcaagcgtctagaagctaaaatcaagggcaaaggtacatcacttgga
gttggacggggacgtgctattgctatgcgggccaaagcacaggccgcaggtcgtggggct
gcacctggcagaggtgttgtgccacctgtaaggaggtga

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