Ipomoea triloba (trilobed morning glory): 116000270
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Entry
116000270 CDS
T07384
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1 isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03022
Basal transcription factors
itr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116000270
09124 Replication and repair
03420 Nucleotide excision repair
116000270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
itr03021
]
116000270
03400 DNA repair and recombination proteins [BR:
itr03400
]
116000270
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
116000270
Transcription machinery [BR:
itr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
116000270
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
116000270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
116000270
NCBI-ProteinID:
XP_031096184
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Position
12:complement(21808006..21817469)
Genome browser
AA seq
765 aa
AA seq
DB search
MGHGDKGRPSKKMKFSSKEEHRSVEEDGPYYADEINDDSQDEGKKRDFTKLELKPDHANR
PLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETE
TIVSVLSKLSKTKLPKEMIDFIYASTANYGKVKLVLKKNRYFIESPFPEVLKKLLQDEVI
GRARISSEGVHGNDGFTVSKSAGEIEGRHDELLNEAELAAAAEEKETHSFEIDPSQVENV
KQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGII
VLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIREEQICRFTSDSKE
RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISL
TKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKE
FFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL
RKPMIYGATSHVERTKILEAFKTSKAVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQ
EAQRLGRILRAKGRHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKV
ITNLPPPDSGPELSYHHLDDQLALLGKVLSAGDDAVGLEQLEEDADDIALQKARRSMGSM
SAMSGANGMVYMEYNAGKKGPGGHVQKSKPKDPSKRHHLFKKRFG
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgggccacggcgataaaggccgaccaagcaaaaagatgaagttttcctcaaaggaggaa
cataggtctgtcgaagaagatggaccatattacgccgatgaaatcaatgatgactctcag
gatgaagggaagaaaagggattttacgaaacttgaactcaaacctgatcatgcaaatcgc
ccattatgggcctgtgcggatggtcggatttttctcgaaacattctctcccttatacaaa
caggcttatgattttctcatagccattgctgagcccgtttgcaggccggagtcaatgcat
gaatacaatttgacacctcactcattgtatgcggcagtgtcagttggtttagagactgaa
actatagtatctgttttgagtaaattgtcaaagaccaagctgccaaaagaaatgattgat
ttcatatatgcttctactgccaactatggcaaagtgaagcttgttctaaagaagaatagg
tatttcattgaatctccttttcctgaggtattgaaaaagttgcttcaagatgaagttata
ggtcgagcaagaatttcatctgagggggttcatggaaatgatggatttactgtcagcaag
tctgcgggtgaaatcgaaggtaggcatgatgaattgttaaatgaagcagagctggcagct
gcagcagaagaaaaagaaactcattcatttgaaattgatccttctcaggttgaaaatgtg
aagcaacgatgcttgccaaatgccctgaattatccaatgttggaggaatatgacttcaga
aatgatacagttaatcctgatcttgatatggagttgaagcctcatgctcaacctcgacct
tatcaagaaaagagtcttagtaagatgtttggaaatggtagagcaagatcaggtatcatt
gtgctgccctgtggtgcagggaagtccttagttggtgtttctgcagcttgtagaataaaa
aaaagctgtctttgtttagcaacaaatgctgtgtctgtggatcaatgggctttccaattc
aagttatggtcaactattcgagaagagcaaatatgtcgtttcacatctgacagcaaagaa
aggttccgtggcaatgctggtgttgtggtgacaacttataacatggttgcttttggtgga
aaacgttctgaagaatctgaaaagatcattgaagaaataagaaacagagaatgggggttg
ctccttatggatgaggtgcatgtggttccagctcacatgtttcgaaaggttattagcctt
actaagtcacactgcaaacttgggctcactgcaacacttgtgagagaggacgaaagaatc
actgatttgaattttcttattggccccaagttgtatgaagcgaattggttggacttggtg
aaagggggttttattgcaaatgtgcagtgtgctgaggtgtggtgtcctatgacaaaggaa
ttctttgccgagtatttgaagaaagagaattctaagaagaaacaggcactttatgtgatg
aatccaaacaaattcagggcttgcgagtttcttatccgtttccatgaacagcagcgtggg
gataagataattgtttttgctgacaatctgtttgcgctcacagaatatgcgatgaagcta
cggaaacctatgatctatggtgctaccagtcatgttgaaagaactaaaattcttgaggct
tttaaaactagcaaggcagtaaacaccattttcctctctaaggtcggtgataattctatt
gatattcctgaagcaaatgttataatacaaatttcatcacatgctgggtcaagacgacag
gaagctcaacgtcttgggcgtattcttagggccaaggggcgccatcaagatagaatggct
ggaggtaaagaggaatataatgctttcttttactctcttgtatcgacagatacacaggaa
atgtattattcaactaaaagacaacagttcctgattgatcaagggtatagcttcaaggtt
atcacaaacttgccacctcctgattcaggacctgagttgagttaccatcatcttgatgac
cagcttgcacttctaggaaaggtactaagtgcaggcgatgatgcagttggcttggagcaa
ctggaagaagatgcagatgatatagcccttcagaaggctcgtcgctctatgggttctatg
agtgcaatgtcaggagcaaacggaatggtttatatggaatacaatgctgggaaaaaaggg
cccggagggcatgtgcagaagagcaagccgaaagatccatccaagagacaccacttattc
aagaaacgctttggttga
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