Ipomoea triloba (trilobed morning glory): 116000367
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Entry
116000367 CDS
T07384
Name
(RefSeq) small RNA degrading nuclease 1-like
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116000367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
itr03009
]
116000367
Ribosome biogenesis [BR:
itr03009
]
Eukaryotic type
Pre-60S particles
RNases
116000367
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GFIT
Motif
Pfam:
Bap31_Bap29_C
HIP1_clath_bdg
BRAP2
Motif
Other DBs
NCBI-GeneID:
116000367
NCBI-ProteinID:
XP_031096299
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All DBs
Position
12:3294685..3300448
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AA seq
519 aa
AA seq
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MDGMIASAKKDVLVEIVKLAQKREMKGNQGGWKDFLKFYDKKFGSSLSDPAKRSADVLAA
FLKTFSQKEDLKIFEKVLQCHSNRDAVLEFQKSSADTESPEQRLVRLTLENPQYPVDYSF
PSHEEGWLITKRSKKSKVMQSTEMLAVDCEMALCDDGTEALIRVCAVDRNLKVKLDEFVK
PSKAIVDYRTDITGITATDLDGVTCSLADVQRSLKKLLSHGKILVGHSLYNDLRALQIDH
PRVIDTAYVFKYRDEPPNRRPSLSNLCKFVLGFELRKKGSPHNCLDDACAAMKLAIEKVE
HDVDNVIPFVREKVQEEVQMAKLLVHRVPVVVSSEDLHKVISGEFTVEVKTNKKPRGDRY
SAFAIFENQQAATEAFEKLDGILEKDTSGRPQKLVSFELDTGVSGSLCVCKMARHDSCKS
NNASTKRPLQDEEPLGESKKSRTDHQGEELEKTNTTATSDQCETHLKEIERLKRELSQRD
QEIANLKEIELLKRELSQRDQEIANLNKIVVALTRKQGL
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggatgggatgattgcctctgcgaaaaaagatgtacttgttgaaattgtgaagttagcc
caaaaacgtgaaatgaaaggtaaccaaggaggctggaaggactttttgaaattttatgac
aagaagtttggatctagcttgagtgaccctgccaagaggtctgctgatgtcttagctgca
tttttaaaaacatttagtcaaaaggaggatttgaagatatttgagaaggtgttacaatgt
cattccaatcgtgatgctgtgcttgaattccaaaaaagttcagcagacactgaatcccct
gaacagaggctagttcgcttaactcttgaaaaccctcaatatccagttgattattccttc
ccgtcacatgaggagggctggctaattaccaaacgcagtaaaaagtccaaggttatgcaa
tcaactgaaatgcttgcagttgactgtgagatggctctttgtgatgatggcactgaagct
ttaatcagggtctgtgctgttgatcggaatttaaaggttaaacttgatgaatttgtaaag
cccagtaaagcaattgtagattacagaactgatattacaggaattactgcaacagattta
gatggagttacttgttccttggctgatgtacagagatctttaaagaagttgttatctcac
ggaaagatattagttggccacagcttatacaatgaccttcgagctttacagatagatcat
ccaagagtcattgacacggcttatgtcttcaaataccgggatgagcctcctaacagaaga
ccttcgctaagtaacttatgtaaatttgtgttaggttttgaacttcgaaagaagggatcc
ccacataattgcttggatgatgcatgtgctgcaatgaagcttgctattgaaaaagttgag
catgatgttgataatgttatacctttcgtccgtgaaaaggtccaagaggaggtacagatg
gcaaaactactcgtccacagggtaccagtggttgtttctagtgaagatttacataaagtg
atttctggagagttcactgttgaagttaagactaataaaaaacctcgaggagatcggtat
tctgcatttgcaatttttgaaaatcagcaagcggcaactgaggcatttgaaaagcttgat
ggtatcctagaaaaggatacatctgggcggccccagaaactcgtatcatttgaactcgac
actggagtatctgggagtttatgtgtttgcaagatggcccgtcatgattcttgtaaaagt
aacaacgcatcaactaaacgcccacttcaagatgaggagcccttgggtgagtccaagaaa
tccaggacagatcatcaaggcgaagagctagagaagaccaatactactgccacaagtgat
cagtgtgaaacccacttgaaggagattgaacggctgaagcgagaactaagccaaagagat
caagagatcgccaacttgaaggagattgaattgctgaagcgagaactaagccaaagagat
caagagatcgccaacttaaataaaatcgttgttgcacttacgaggaaacagggactttag
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