Ipomoea triloba (trilobed morning glory): 116001350
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Entry
116001350 CDS
T07384
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116001350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116001350
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116001350
mRNA degradation factors
5'-3' decay
Decapping complex
116001350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transferase
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_2nd
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_TEP1_2nd
Sey1_3HB
TRI-like_N
TFIIIC_delta
Motif
Other DBs
NCBI-GeneID:
116001350
NCBI-ProteinID:
XP_031097092
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Position
13:21424751..21471095
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AA seq
867 aa
AA seq
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MIPKFEHILNAIEDAKDITTMIVKSLSSSLKAHKLRFSDNDNKFENSLEQHLQVQASIAP
LLFCVTRSNPQLIVPSTSTPHEHKPLSDIDDQGTIRVHIPVLMFYRNSVERRGEDPAMAI
KEGLAKALVFYYPLAGRIFEGENGKLIVNCNGKGVLFVEAKANVKLEQLSEKSMQPPCPY
LKQLLNNVPGSKGIIDCPLLLIQVIRFTCGGLALGIRFNHTMMDAQGFIQFVTAVSELAK
GASAPSTFPIWERGLLTARPTPTITYEHNEFKDFDLSKTSRKNICHSLLIKRSFTFGSRE
LQAIKDQCPSSTTFEALSACLWKCRTIALRPDPNSIVLLTIIVNIREKLQDSKLPLGYYG
NAIVSPATISKGRYLSGDHILYDIDVRLPGEVPIKADRTGISNYSPFPGLVLGRRLAVAK
THICYPFGPMMSLIRVHNVKSALASTLQGLDERVTDLAFFAEDVHLLASASVNGRVYIWK
ITEDENDKHEPEITSQIVIAIQIVGEGESFHPRVCWHCEKQEILIVGIGKRVLKIDTTHI
GKGEVFTAKRPLRCPVDCLVEGVQLVGTHDGEVTDLSMSQLKTTTLLVSASVDGMIKIWE
DLKSTPIAVLRPHDGQPVNSVTFFRPPDSPKHIVLITGGPLNREVKIWSSASEEGWLVPS
DAEPWHCTQTLELKSSAETQVEDAFFNQVVAFPRAGLLLLSNAKKNSIYVVHLEYGPNPA
ATRMNYIAEFTVTMPILSFTGTRDLLPCEHVVQVYCVETQAIHNYALDLSQCLPPPLDNV
VLERSESSTEQEFNTYVDALWVRHLQEESAKQEKLLCEDLPGRVKDIVKKELSAFVEAIT
PVIEKTVSKAISEAFQKQKGVGENNQV
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgattccaaagtttgagcatattctgaacgcgattgaggatgctaaagatataacaaca
atgatagtcaagtcattgtctagttcattgaaagcacataaattgaggtttagtgacaat
gacaacaaatttgagaattcgttggaacaacatcttcaagtgcaagcctctatcgctcca
ctgctgttctgtgtaacaagaagtaaccctcagcttattgtgccatcaacctccacacct
catgaacataaaccgctttccgatatcgatgatcaaggcaccattcgagttcatattcca
gttttgatgttttacaggaacagtgttgaaaggagaggggaagatccagcaatggctatc
aaagaagggttagctaaagcacttgttttctactatcccttggctggtaggatttttgaa
ggggagaatggaaaactgattgtgaattgcaatgggaaaggggttttgtttgttgaagca
aaagcgaatgttaagcttgagcagctaagtgagaaatccatgcagccaccatgtccatac
ttgaagcaactcctcaacaatgtgcctggctccaaagggatcattgattgccctctccta
cttattcaagtaatccgttttacttgtggtggccttgcattgggaattcggttcaaccat
accatgatggatgcccaagggttcattcagtttgtaactgcagtgagtgaacttgcaaag
ggtgcttcagctccttcaacatttccgatttgggagagaggcctcttaactgcaaggcca
actccaaccatcacctacgaacacaacgagttcaaggattttgatctatccaagacttca
agaaaaaatatatgtcactccctcttgatcaaacgttctttcacttttggctcaagagag
ttgcaagctatcaaggaccaatgcccttcaagtaccacattcgaggcactttctgcgtgc
ttatggaaatgtcgtaccattgctctccgaccagatcctaattcaatagtgctattgacc
attattgtcaatatacgagaaaagttgcaagactcgaaactgccacttggatactatggt
aatgcaatcgtatcccctgccaccatttctaaaggtcggtatttgagtggtgatcacatt
ctatacgatatagatgtgagattgcctggtgaggtgccgattaaagccgatcgtactggc
atctcaaattattccccatttcccggccttgttttaggccgtaggctcgcggtggccaag
acgcacatttgctatccgtttggacctatgatgtcactcatccgggtccataatgtcaag
agtgctttggcatcaacgcttcaagggcttgatgagagggttacagacctggccttcttt
gcagaggatgttcaccttttggctagtgcaagtgttaatgggcgggtttatatatggaaa
ataactgaggatgagaacgacaagcacgagccagaaataacaagccagatagtcattgct
attcaaattgtgggagaaggagaatcttttcacccacgagtctgttggcattgcgaaaaa
caggaaattcttattgttgggattggaaaaagagttctgaaaattgataccacacacatt
ggaaaaggtgaagtatttacagcgaaaagaccgctgaggtgtccagttgactgcttggtt
gaaggtgtccagcttgttggtactcatgatggagaagtgactgatttatcgatgtctcag
ttgaagaccaccactcttcttgtatctgcttcagtagatggcatgataaagatttgggag
gatctcaaatcaaccccaattgctgtactgaggccacatgatggccagcctgtaaattct
gttacattttttcgtcctccagacagccctaagcacatcgtactaattactgggggccca
cttaatcgagaagtgaagatatggtcatcagcaagtgaagaaggctggttggttccaagt
gatgctgagccatggcactgtacacagacattagagctgaagagttcagctgaaactcaa
gttgaagacgcattttttaatcaagttgtggcttttccacgagctggtttactcttatta
tcaaatgccaaaaagaattctatatatgtagtgcacctagaatatggtcctaacccggca
gccacaaggatgaattacattgctgaatttactgttactatgccaatacttagtttcact
gggacaagggacctactgccatgtgaacatgtagttcaggtgtattgtgttgaaacacag
gctattcacaactatgctctggacttatcacagtgtttacctcctccattggacaatgtt
gtgcttgagaggtcagaatctagtactgaacaagaatttaatacttatgttgatgcttta
tgggttcgtcatcttcaagaagaaagtgcaaagcaggaaaagttattatgtgaggacctg
ccagggcgggtaaaagatatagtgaagaaggaattaagtgcctttgtagaggcgataaca
cccgttatagagaaaacagtgtccaaagctatttcagaagcttttcagaaacagaagggt
gttggtgaaaacaatcaagtctaa
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