Ipomoea triloba (trilobed morning glory): 116002584
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Entry
116002584 CDS
T07384
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
itr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116002584
09123 Folding, sorting and degradation
03018 RNA degradation
116002584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116002584
03041 Spliceosome [BR:
itr03041
]
116002584
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116002584
mRNA degradation factors
5'-3' decay
Lsm complex
116002584
Spliceosome [BR:
itr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
116002584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
116002584
NCBI-ProteinID:
XP_031098609
LinkDB
All DBs
Position
13:complement(22087397..22091943)
Genome browser
AA seq
88 aa
AA seq
DB search
MSSNNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEG
RRITKLDQILLNGNNIAILVPGGSPDTE
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgaacaacccatctcaactacttccatctgagctaattgaccgctgcattggg
tccaaaatctgggtcataatgaaaggggataaggagcttgttggaacccttagaggattt
gatgtttatgttaacatggtcctggaagatgtcactgaatacgagatcacctctgaagga
cggcgaataacaaagcttgaccagatcttgctcaatggaaataacattgccattcttgtt
ccgggaggctcacccgatacagaatga
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integrated database retrieval system
