Ipomoea triloba (trilobed morning glory): 116003122
Help
Entry
116003122 CDS
T07384
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116003122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116003122
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116003122
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116003122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Aldose_epim
Motif
Other DBs
NCBI-GeneID:
116003122
NCBI-ProteinID:
XP_031099150
LinkDB
All DBs
Position
13:6038807..6047331
Genome browser
AA seq
554 aa
AA seq
DB search
MSGLLNSGLNGSASNLPETTARALATSFSAQSGSTATVLNHSGGTVQSLQGIHGNFNMSN
VHGTFASRNSAMTGGPSGSVQQAGNVSNGRFSINNIPTVLSQLSLASSHGHSGATNIGGR
IANSMTNIVSGSNIGRGLSADGGSNMHGVASRINLTAPQMVSMLGNSYSGAGVPLLQNQF
QAGNSHLASMALLNEYNARDNATFDINDFPQLGGRPPSAGGSQGQLGFIRKPNIGFSQQN
QEFSIQNEDFPALPGFKGQKDQLQESMASMMQSQHLAVGRSSGFSFGGNYSSHQPQQQQA
SSTNGSGISFPPANYQDARFHGPEARTMGPPSTGSGSSNLSNLGPYDQLLDHYQPFQRQS
QFRSISPFRDQDLKPLQASQAADRFGMFGLLNVIKMTNPALSTLALGVDLTSLGLNLNSV
DNLHKTFASPWSDEPAKGEPEYTIPECYNAKQSPALKQSYFSKFRPETLFYIFYSMPKEE
AQLYAANELHVRGWFYHRELRLWFTRVTNIEPLVKTATYERGCYFCFDPNTWEVVRKDNF
VLQYEMIEKVPVLP
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggctactaaattcgggattgaatgggtcagcttcaaaccttccagaaaccact
gctagagctttggccacttcattttcagcacagtcaggttccactgccactgtattgaat
cactctggtggaacagtgcaaagcctgcagggcattcatgggaatttcaatatgtcaaat
gtgcatggtacatttgcatcaagaaattcagcaatgactggtggtccttctggcagtgtt
caacaagcaggaaatgtttctaatgggagattttcaataaataacattccaactgtgctt
tctcagttatcgcttgcaagctctcatggacattcaggggcaactaacataggaggaaga
attgcaaattcaatgactaatattgttagtgggagcaacattggtaggggtctaagtgct
gatggaggctcaaatatgcatggtgttgcttctcgcataaatttaacagctccacaaatg
gtatcaatgctagggaattcttattcaggtgctggtgtaccactgttgcaaaatcaattt
caagcagggaatagtcatttagcttcgatggcacttctgaatgaatataatgcccgtgat
aatgctacctttgatataaacgactttcctcagttgggtggccgtcctccttctgctggt
ggttcccagggacaactaggtttcatacggaagcccaacattggtttctcccaacagaat
caagaatttagtattcaaaatgaagattttcctgctttaccaggatttaaagggcagaaa
gatcaacttcaagaaagcatggcatccatgatgcaatcgcagcatttagcggtgggaaga
tcttctggattcagtttcggtggtaattattcatcacatcaacctcaacagcagcaagca
tcatcaacgaatgggagtgggatttcttttccaccggcaaattatcaagatgcccgtttc
catggtcctgaggctcgaaccatgggtccaccttcaactggatcaggttcttccaacttg
tcaaatttgggaccttatgatcaacttctggatcactatcagccattccaaaggcaatct
cagttccgatcaatcagcccatttagagatcaggatctgaaacccctacaggcatcacag
gctgctgatcgatttggaatgtttggtttactaaatgttatcaaaatgacaaatcctgct
ttgagtacacttgctcttggtgttgatctgacctcacttggtctaaacttgaactcagta
gacaatcttcataagacttttgcctctccttggtctgatgaacctgccaaaggggagcct
gaatacaccatcccagaatgttataatgctaaacaatctcctgccctaaaacaaagttac
ttctcaaaatttaggccagagacattattttatatcttctacagcatgcctaaggaggag
gcacaactgtatgcggcaaatgagttgcatgttagggggtggttctatcacagagagctc
cgcttatggttcacaagggtcacaaatattgagcctcttgtcaagactgctacttacgag
agaggctgttacttctgctttgaccccaacacttgggaggtcgtgagaaaggataacttt
gttctgcagtacgaaatgattgaaaaggtcccagtgcttccttag
DBGET
integrated database retrieval system
