Ipomoea triloba (trilobed morning glory): 116003540
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Entry
116003540 CDS
T07384
Name
(RefSeq) small RNA degrading nuclease 5
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116003540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
itr03009
]
116003540
Ribosome biogenesis [BR:
itr03009
]
Eukaryotic type
Pre-60S particles
RNases
116003540
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_T
G6PD_N
Rv2179c-like
E1_UFD
Motif
Other DBs
NCBI-GeneID:
116003540
NCBI-ProteinID:
XP_031099296
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All DBs
Position
14:4761817..4770544
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AA seq
565 aa
AA seq
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MNSSNNRTRDSVEENSSNDDKAFFDIYGPQARAEVVFKQPEANSTLNLQDVQGLATWVLA
EGFMPSWVFIKNKPLIPKVVMLYVPGLDAALYLSQSKILKSFKQCCGIPRAVLALSCVSD
GTQTIDALLTYKMKRKRDGAEQTIAQTSEQGPTNSGSEITTFLDLKKSMPFPISYYTLTA
KELEDNGYCCDHPEYLSTLPAPSGTHPYEILALDCEMCITNEGFELTRVTLVNFQGQVVL
DKLVKPLNEIIDYNTRYSGITREMLNGVTTTLKDIQEDFLQLVFKETVLIGHSLENDLSA
LKIIHNLVIDTAILYKHPKGRSFKTALRVLSRRFLGRQIQDSGNGHDSIEDARAAMELAI
LKIRNGPDFGSPQPLLRKKLLTVLSDSGKTSSIIDNMYIVKRYASESSHSIAVSSDDEAL
AKANKEARNDKVHFIWTQFSELYSYFKKEADDAEKLNRKLAQMIAMLTCENKSSNRKNIK
YEITPELKNILNRMDDRVRKLYSNLPPNAMLVICTGHGDTAIVQRVRKTLSEETETAMSR
EKVVKVLEDLQAQAEVGLCFVGVKH
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgaattcatccaacaaccgaaccagagattccgtcgaagaaaattccagcaatgacgat
aaagccttctttgatatttatgggccgcaggcaagagcagaagttgttttcaagcaacca
gaagccaactcaacattgaatttgcaagatgtgcaaggattggccacctgggtgcttgct
gaaggattcatgccatcatgggtttttatcaagaacaagcccttgattcctaaagtggtt
atgctgtatgttcctggccttgatgctgcactttacttgtcccagtctaaaattctcaaa
agttttaaacaatgttgtggcattccaagagcagttttagctctcagttgtgtatcagat
ggaacacaaactatagatgcacttcttacctacaaaatgaaaagaaaaagggatggtgct
gaacaaacaattgctcaaacgtctgaacaagggcctacaaattctggctcagagattaca
acttttcttgaccttaagaaaagcatgccattccccattagttattacactcttactgct
aaggaactggaagataatggatactgttgtgaccatccagaatatctctcaacacttcct
gctccttcaggaactcatccatatgagattttagcacttgattgtgagatgtgtattaca
aatgaaggatttgagctcaccagagtcacacttgtaaattttcaagggcaggttgtatta
gataaactggttaagccacttaatgagattattgattataacacaaggtacagtggaatc
acgcgtgagatgttgaatggtgtgactaccactcttaaagatattcaggaggattttcta
caactggtctttaaagaaactgttctgattggacactccttagagaatgatttgtcagct
ctaaagatcattcacaatttggtgattgacactgccatactgtacaaacacccaaaggga
agatcattcaaaactgcacttcgtgttctaagcaggagatttcttgggaggcagatccaa
gattctggaaatgggcatgatagcattgaagacgcaagagctgcaatggagctggccata
ctaaagattcgaaatggacctgattttggctcgcctcaaccactcctgcgaaagaaactc
ctcacagttttgagcgactctgggaaaacatcctccataattgataatatgtacatagtg
aaaagatatgcctccgagtcatcccactcaattgcagtatcatctgatgatgaagctctt
gcaaaagccaataaagaggcgagaaatgacaaggtccattttatttggacccaattttca
gaattgtattcctacttcaagaaggaagcagatgatgctgagaagctaaatagaaagtta
gcacagatgatagcaatgctaacatgtgagaacaagtcttcaaacagaaaaaacatcaaa
tatgagataacacctgaattgaagaacattcttaatcgtatggatgatagggttagaaag
ctctattccaatctacctccaaatgccatgcttgttatttgcactggtcatggagacacc
gcaatagttcaaagagtgaggaaaaccctgtcggaagaaactgaaactgcgatgtcccgg
gagaaagttgttaaagtgctggaagatctgcaggcccaagctgaagtgggattgtgcttt
gtaggtgtgaaacattaa
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