Ipomoea triloba (trilobed morning glory): 116004337
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Entry
116004337 CDS
T07384
Name
(RefSeq) serine/arginine repetitive matrix protein 1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03013
Nucleocytoplasmic transport
itr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116004337
03015 mRNA surveillance pathway
116004337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116004337
03041 Spliceosome [BR:
itr03041
]
116004337
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116004337
Spliceosome [BR:
itr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
116004337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
116004337
NCBI-ProteinID:
XP_031100192
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All DBs
Position
14:20485902..20492678
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AA seq
883 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELEHLVDMRKVKMDVMRPWIAKRVTELV
GIEDEVLINFIYSLLEGKDVNGKEVQIQLTGFMERNTGKFMKELWSLLLSAQNNASGVPQ
QFLDAKEEETKKKKAETDRITNEIQRRKEREYQELEQEKKKADGDVDISRDTHAALEPST
KHHARGSPPSAEKVYADKNGSRGRNRSSRSPNSADHSPLPRDRRSRSISRSFSNSRSYSG
ERRRSRSRSSPEQRGRSISSERARPSPVKRSITPRHKYSPRRSVSVSPPRRRRRSVSRSR
RRSPSPTRYRRHSPLRRRSRSPKRRRSRSPIWRRSRSPIRRSPMRHRLRSPLRPRSPLRR
RSPSPVRRRTPSHIRHRSPSPFMRRSRHSPLSPRRGSPTTVRRPISGRRVSRSPVRRRSR
SPIQRRSASPEYSNSASPVHHRALSPIKKRTPKRERMSPVHSPPERMRSHGKYSPSRSSS
EDGSQPTVVRKESNIVGRRQPISSRSPRSDLYDRKPSHHKRSPSPRQSPSFSESPPRRSP
PSISESLARRSPSVSDSRQRKPPSISESPPAARERSPSEERSRSPNKRTLNERRGKIIRT
GSPSPLRKQRDHKLHHDAYERTPDERDVNSLRGPVETRSHSNGSGSRKPKEAMRGEKTSG
RMDHIKDFDDRQRSPVTHRGSHVAKKDRESLDLESPKADERNLSRLNAIQGEDQPVDAKH
LHETSRKVEDVEQIIYKNSGSEECDKRRSRVKEKRKHKRSVRHESTSDDDSSYDSGVDER
KEAKRRKKEEKKLRKEEKRRRRDERRRKKEERRAGKQKLKSDNAISSPSDAEKTNDGNVS
DEELARKEFHGREIEGTDSAKKLEIELREKALESLRAKKGIGH
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggagggtttttccggggcacgtccgccgatcaggatactcggttctccaacaag
caagctaagctattgaaatcgcagaagttcgctcccgaattggagcatctggtggatatg
aggaaagtaaagatggatgtgatgagaccttggatagccaagcgagttactgagctggta
gggattgaagatgaagtgcttatcaacttcatttatagtcttctagaaggaaaggatgtt
aatgggaaagaggttcaaattcaactgactggattcatggaaaggaatactggaaagttc
atgaaagagctgtggtcactactccttagtgcacagaacaatgcaagtggtgttcctcag
cagttcctggatgccaaggaagaggaaacaaagaagaaaaaggctgagactgatcgaata
acaaatgaaatacagaggagaaaagagagagaatatcaagaacttgagcaagaaaaaaag
aaggcggacggcgatgttgacatttcaagagatacgcatgctgctttggaaccatctaca
aagcatcacgctaggggttccccgccttcagctgaaaaggtgtatgctgacaaaaatggt
tcaagaggaagaaacaggtcctcaaggtctccaaactcagctgatcattcaccactacca
agggatagacgttcaaggtcaattagcaggtcattttccaactctagaagttactcaggg
gaaaggcgtaggtcaaggagtagatctagtcctgaacaaagagggcgctccatatcttct
gaaagggcacgcccctctccggtgaagcggtcaattacacctcgccataaatattcacct
cgacgatctgtgtctgtgtctccaccaaggcgaagacgtagatcggtgtctcgttcacgt
cgtaggtcaccttcccctacgcgataccgcaggcattctccgttgcgacgtaggtcgagg
tctccaaaacgacgaagatcacgatcaccaatctggcgtaggtcaaggtcaccaattcga
cgttcaccaatgagacatcgactccgatcacctttaaggcctcggtcacctttaaggcgc
cgatctccatctcctgttcgtcgaagaacaccatcccatatacgtcatagatcaccatcc
cccttcatgcgacggtctcgacattctcctttgagtccacggcgtggctctccaactact
gttcggcgccccatttctggccgcagggtatccaggtccccagtcaggagaagatctagg
tcacctattcaaaggaggtctgcttcacctgaatactcgaattctgcatcaccagttcat
catagggccctttcaccaattaagaagagaacaccaaagcgtgagaggatgtcacctgtt
cattctcctccagaaaggatgagaagccatgggaaatactctcccagccgttcatcttca
gaggatggttcacaacctacagtggttcgtaaggaatccaatattgtgggacgcaggcaa
cctatttcttctaggtcaccaaggagcgatttatatgatagaaagccttcacatcataaa
aggtcaccttcacctcgccagtccccatctttttcagaatctccaccccgtaggtctcct
ccatctatttcagaatctctggctcgtcggtctccatctgtttcagactctcgacagcgt
aaacccccatccatttcagaatctccaccagctgccagggaaagaagtcccagtgaagag
aggtcaaggagtcccaataagagaactttgaatgaaaggaggggaaagataattcgaact
ggaagtccaagtcctttgagaaaacaaagagatcataaattgcatcatgatgcatatgag
agaaccccagatgagagggatgtgaattctttaaggggacctgttgagactaggagccac
tctaatgggtctgggtcaaggaagccaaaagaagccatgagaggtgaaaaaacatctgga
agaatggatcacatcaaagattttgatgatcgacagaggtcacctgtgactcatagaggc
tcacatgtagctaagaaggatagggaatcattggatctggagagccccaaagctgatgag
aggaacctcagtcgtttaaatgccatccagggagaggatcagcctgttgatgcaaaacat
ttacatgagacatctaggaaagtggaggatgttgaacaaatcatttataagaattcaggt
tctgaggaatgtgataagcgaagatctagagttaaggaaaagaggaagcacaagagatct
gtcagacacgagtcaacttctgacgatgattctagttatgattcaggtgtggatgagagg
aaggaggctaagaggaggaagaaagaagagaagaaattgaggaaggaggagaagcgtcga
cgtcgggatgagagacgtcgtaagaaggaagagaggcgtgctgggaaacaaaaattgaag
tcagataatgctatatcttcgccttctgatgctgagaagactaatgatggtaatgtttcg
gatgaggagcttgccagaaaagagtttcatggacgtgagattgaagggacggattcagcg
aagaagcttgaaattgagttgcgagagaaggctcttgagtctcttagagcaaaaaagggc
attggccactaa
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