Ipomoea triloba (trilobed morning glory): 116004412
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Entry
116004412 CDS
T07384
Name
(RefSeq) general transcription factor IIH subunit 2 isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03022
Basal transcription factors
itr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116004412
09124 Replication and repair
03420 Nucleotide excision repair
116004412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
itr03021
]
116004412
03400 DNA repair and recombination proteins [BR:
itr03400
]
116004412
Transcription machinery [BR:
itr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
116004412
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
116004412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
Tfb4
Motif
Other DBs
NCBI-GeneID:
116004412
NCBI-ProteinID:
XP_031100309
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All DBs
Position
14:9628561..9636736
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AA seq
477 aa
AA seq
DB search
MIQAVGDRSHSLLALSHATLSPVAAQVRTALPSRQSSLSEPHLQLSPNLLEFEAGSVEKK
MNGAERRFNTNEEDEDDEEESGRGIEAWERTYADERSWESLQEDESGLLRPIDNKTLYHA
QYRRRLRTTSAARIQKGLIRYLYVVLDFSKAATEMDYKPSRMVVVAKQVEAFIREFFDQN
PLSQIGLVMLKDGVAHCLTDLGGSPEAHIKAVMGKLECSGDASLQNGLELVHDLLNQIPS
YGHREVLILYSALNTCDPGDIMETIQKCKKSKIRCSVIGLSAELFICKHLCQETGGMYYV
ALDEAHIKELVLEHAPPPPAIAEFAVANLIKMGFPQRAAEGAISICSCHKEAKVGGGYTC
PRCKARVCELPTECCICGLTLVSSPHLARSYHHLFPITAFDDVSPSIKNNLQKVPKNCFG
CRQSLLNPGNIPAPCVACPKCKQHFCLDCDIYIHESLHNCPGCESFKSSASVSNMQE
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgattcaagcagtaggagataggagtcacagcctgctagctctctctcacgcaaccctc
tcgcctgtggccgctcaggtgcgcactgccctgccgagtcgccagtcgtcgctgagtgag
ccacacctgcaattgagccctaatttgttggaattcgaagctggttcggttgagaaaaaa
atgaatggcgctgaaagacgatttaatacaaatgaagaggacgaagatgatgaagaagaa
tctgggagaggtattgaggcgtgggagagaacctatgcagatgagaggtcgtgggagtct
ctacaagaggatgaatctggactcctgcgccctattgacaacaaaaccctctaccatgct
cagtatcgccggcgcctccgcactacatctgctgcccgaattcagaagggcctgattcgc
tatctctatgttgtacttgatttctccaaggcagctactgaaatggattataaaccaagc
agaatggttgtggttgcaaaacaagtggaggcttttattagagagttctttgatcagaat
cccttgagtcagattggcctggtaatgttgaaagatggggttgctcattgtttaaccgat
cttggtggcagcccagaggctcacattaaagcagtgatgggtaagttggagtgctcaggt
gatgcttcacttcagaatgggctcgaacttgtgcatgatcttctaaatcaaatcccatca
tatggtcatcgtgaagttctcattttgtattcggctctaaatacttgtgatccgggggat
ataatggaaacaattcagaaatgcaagaaatccaagataagatgctcagttattggcctc
tctgctgaactctttatatgcaagcatctttgccaagaaactggtggaatgtattatgtt
gcattggatgaggctcacataaaagaattggtactggagcatgccccgccacctccagca
atagcagaatttgcagttgcaaatttgatcaagatgggttttccccaaagagctgcagaa
ggtgcgatttcaatctgttcttgccataaggaggctaaagttggtgggggctacacttgt
ccaagatgcaaagcacgtgtttgtgaactgcctactgaatgttgtatttgtggtctgacc
cttgtttcttctccccatttggcaaggtcataccaccacctattccctatcactgctttt
gatgacgtgtcaccctctattaaaaacaatttgcaaaaggtaccaaagaattgttttggc
tgccggcaaagtctcttaaaccctggcaacattcccgccccatgtgttgcttgtccaaaa
tgcaaacaacacttctgtcttgattgtgacatctacattcatgagagcttacacaactgt
ccaggctgtgagagcttcaagagttctgcatcagtcagcaatatgcaagaatga
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