Ipomoea triloba (trilobed morning glory): 116004506
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Entry
116004506 CDS
T07384
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116004506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116004506
03012 Translation factors [BR:
itr03012
]
116004506
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116004506
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116004506
Translation factors [BR:
itr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
116004506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
nSTAND3
AAA_22
ATPase
AAA_19
Dicer_dimer
AAA_11
T2SSE
PhoH
NPHP3_N
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-GeneID:
116004506
NCBI-ProteinID:
XP_031100442
LinkDB
All DBs
Position
14:complement(1025055..1036752)
Genome browser
AA seq
1210 aa
AA seq
DB search
MTWPTLQAFHPQFPFQNPKTHRTISSSADAFSAAAVRMKDRMPSPHGAVYVPPHQRLRSV
IVAPSATPQPGATTPIDSKPSFSSKTSFPKAKPNNPYPYLPPHHQLQPQQQCHFRNTQPQ
KNPQLDGVYEEGSHRDYELPVFVGSATSDKVDAWKWKMTTLLRDNDNQEIVSREKKDRRD
YEQIAALASGMGLYSHMYAKVVVVSKVPLPNYRFDLDDKRPQREVILPPGLPRRIDDHLK
NYLSCKPSTAMFSRSSSNCSIATDEGLFELPEPLPHNTAAMENIIRRRSMQMHTEQQSWQ
ESAEGRKMLEFRCSLPAYKEKDAILSAISQNQVVIISGETGCGKTTQIPQFILESEIESM
RGAACSIICTQPRRISAMSVAERVAVERGEKLGETVGYKVRLEGVKGRDTHLLFCTTGIL
LRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFS
SYFGGAPAVHIPGFTYPVQTHFLENILEMTGYRLTLYNQVDDYGQEKAWKVNKQAPRKRK
SQLVSAVEDALGAADFKDYSPQTRESLSCWNPDCIGFNLIEYLLCHICENEGPGAVLVFM
TGWDDISSLKEKLQCHPTLGDASRVLLLACHGSMASSEQRLIFDEPEGGVRKIVLATNIA
ETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVRPGICYHL
YPRCVFDALADYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEYL
KIIGALDENENLTVLGRYLTMLPMEPKLGKMIILGAIFNCLDPVLTIVAGLSVRDPFLAP
LDKKDLAEAAKAQFSRDYSDHLALVRAYEGWRDAEKDLAGYEYCWKNFLSAQSMKAIDSL
RREFYSLLKDAGLVDSNAAIYNAWSYDHCLLRAVICYGLYPGICSIVHNEKSFSLKTMED
GQVFLYSNSVNARDSKIPFPWLAFNEKIKVNSVFLRDSTAVSDSVLLLFGGSILKGDMEG
HLTMLGGYLEFFMSSAIAEMFQTLRRELDELIQTKLLYPRMDLHAYHELLSAIRLLLSGD
QCSGKFVFNRQFLQQSKPFVAASSPAAALISRTESGPGGDNSKSRLQTILSRAGYAAPVY
ETKQLGNNQFRATVEFNGTQIIGRPCNNKKQAEKDAAAEALDWLLGENRATNGNVDQISM
FLKKSKTDHS
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgacctggcctactctccaagcttttcacccgcaattccccttccaaaaccctaaaacc
caccgaaccatcagctccagcgccgacgcattttccgccgccgccgtcaggatgaaggac
cggatgccgtctccacacggcgccgtttacgtccctcctcaccagcgcctccgctccgtc
atcgttgctccctccgccactccccagcctggtgccaccacacctatcgattcgaagccg
agttttagcagcaaaacctcattccctaaagctaaacctaacaatccatatccttacttg
ccgcctcaccatcagctccaaccgcaacaacagtgtcatttccgcaacacgcagccgcag
aagaaccctcagcttgatggcgtctacgaggaaggctcccaccgtgattacgagctccct
gtcttcgtcggttcagccacctcagacaaagttgatgcatggaaatggaagatgaccacc
cttttacgtgacaatgataatcaagagatagtctcaagggagaaaaaagataggcgagat
tatgaacagattgcagctttagcaagtggcatgggtttgtatagccatatgtatgcaaaa
gtagtggttgttagcaaggttccattgccaaactacaggttcgatctagatgataaacgt
cctcaaagagaggtaattctgccaccagggctgccaagaaggatagatgatcacctaaaa
aattacctttcttgtaagcctagcacagctatgttttcaaggtcaagcagtaattgtagt
attgctactgatgaggggctttttgagcttcctgaaccactgccacataatacggctgcc
atggagaatatcattcggcggaggagtatgcaaatgcacactgagcagcagagttggcag
gaatctgctgaaggtaggaagatgcttgagtttcgatgtagtcttcctgcttacaaggaa
aaggatgcaatattgagtgccatttcacagaaccaggtggttattatatcaggtgaaact
ggttgtgggaagaccacacaaattccccaattcattttagagtctgaaattgaatccatg
cgtggagctgcatgcagtattatatgtacccagcctagaagaatatctgctatgtctgta
gctgaaagggttgccgtggagagaggggagaaattgggtgaaacagttggctataaagtt
cggcttgaaggtgttaagggaagggacacacatctccttttctgtaccacaggcatcttg
ttgagaagattgctagttgatagaaacttgaaaggtgtgacacatgtcattgtggatgag
attcatgagcgtggaatgaatgaagattttctgctcattgttttaaaagatttactccct
cgtcgaccagaactaaggttgattttgatgagtgcaactttagacgcggagcttttttca
tcatactttggtggggctcccgcagtccatattccgggctttacttatccagttcaaaca
cattttctggaaaatattctggagatgacgggatatagattgacactgtacaaccaagtt
gatgattatggtcaggagaaggcgtggaaagtaaacaagcaggctccaagaaagaggaaa
agccaacttgtgtctgcagttgaggatgcccttggagctgctgacttcaaggattatagc
ccacagacaagagagtctctgtcttgttggaaccctgattgtattggcttcaaccttatt
gaatatcttctgtgccatatttgtgaaaatgaggggcctggtgctgttttagtttttatg
actggttgggatgacataagttctcttaaagaaaagctccaatgtcatcctactttggga
gatgcaagccgggtcttattgctggcatgccatggttctatggccagttcggaacagagg
ttaatattcgatgagcctgaaggtggagttaggaagattgtgttggctactaatattgct
gaaacaagtattaccatcaatgatgtggtttttgttattgactgcgggaaggcaaaagag
acatcatatgatgcactcaataatactccttgtttacttccttcatggatatcaaaggtt
tcagctcaacaaagaaggggaagagctggacgtgttcggcctggaatatgttatcatctt
tatcctagatgtgtatttgatgctcttgcagattaccaactgcctgaaattctgagaaca
cctttgcagtcactttgtttgcaaatcaaaagtttaaaacttggtagcatttctgagttc
ctatccagggctttgcagtcaccagagttgttagcggttcaaaatgctattgaatatctg
aagatcattggggctttggatgagaatgaaaatctcactgttttaggacgctacttaacc
atgcttccaatggaacctaaacttggaaagatgattatacttggagctattttcaattgt
ttggacccagttttaactattgtggctggtcttagtgttcgtgatcctttcttggcacca
ctagacaagaaagatctagctgaagctgcgaaggctcagttttctcgtgattatagtgac
catcttgctcttgtccgtgcttatgaaggctggagagatgctgaaaaagatcttgctgga
tatgaatactgctggaagaattttctttctgcacaatcaatgaaagctattgattctctt
cgaagagagttctactctttacttaaggatgctggccttgttgacagcaatgctgccatt
tacaatgcttggagttacgatcattgtctacttcgagcagttatttgctatggactatac
cctggaatctgctcgattgtgcataatgagaagtcattctcattgaaaacgatggaagat
ggccaggtgtttttgtactctaactctgttaatgcacgggattctaagataccattccca
tggctagctttcaacgagaaaattaaagtgaactctgtttttcttcgggattctacagct
gtctctgactcagtactgctgttatttggtggaagcattttgaagggcgatatggagggc
cacttgacaatgttgggtggatacctagagttctttatgagctctgcaatagcagaaatg
ttccaaacgttaaggagagagcttgacgagctaattcagaccaaactcctatatccgagg
atggatttacatgcatatcacgaacttctgtctgcaatacggttgcttctctcaggggat
caatgcagtggtaaatttgttttcaaccgtcagtttctacaacaatccaagccatttgtt
gctgcatcatcacccgcagcagccttgatatcaagaaccgaaagtggtcccgggggcgat
aactctaagagccgactacagactatactaagccgagcaggctatgcagcccctgtctat
gagacaaaacaacttggtaacaaccagtttcgagcaacagtggagttcaacgggacacag
ataattggccggccatgcaataacaagaaacaagcagaaaaagatgcagcagccgaggct
ctggattggttgttaggggaaaaccgagcaacaaatggtaatgttgatcagatatcaatg
tttctgaaaaagagcaagacagatcacagttga
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integrated database retrieval system
