Ipomoea triloba (trilobed morning glory): 116004528
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Entry
116004528 CDS
T07384
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116004528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116004528
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116004528
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
116004528
mRNA degradation factors
3'-5' decay
Ski complex
116004528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
TpcC
Motif
Other DBs
NCBI-GeneID:
116004528
NCBI-ProteinID:
XP_031100477
LinkDB
All DBs
Position
14:20557172..20569664
Genome browser
AA seq
1357 aa
AA seq
DB search
MDRIEAAKELPFRVGFTGHSGHLTIEPLPPVERPKPLDSLPFVLPPAFPDETPETIQQYI
KDKYLLPQLDADEFTPEKMGRQWEFDWFDRAKILPEPSLPRTIIVPKWEPPFRRPKNPPG
GRWEPESVEIDVSELTAGAEDLGALPQITGPPKDFVRGSVNNRPFRPGGLDGSSSLGRAL
PDGASSGKWVHEVLDGGYAQTIPPGFKKGLDLGDLEMHSSSWNVYEDQSAVNSTSNKKVN
DFSVQFDELFKKAWEEDMTEYVEDGHSSELQAEVKEEFSVKLESLEIDTEVNKPEVAGEV
TVTEKSVLDEILAAASGVSALRLDGERDGSGHEQTEAWAVTGDNKEVVERFNDLIPDMAL
TFPFQLDPFQKEAIYYLERGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTI
SNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVH
YVNDVERGVVWEEVIIMLPRHINFVLLSATVPNTIEFADWIGRTKQKKIRVTGTTKRPVP
LEHCLFYSGELYKVCENEQFVPQGFKAAKDVFKKKNTSSAIGGTGAFHGSSSAANDRSRG
QRRDNFSHGKHPKGPQTSGNVGSSWGNKNSVGQNVMGLRRSEASLWLSLINKLSKKSLLP
VVIFCFSKTRCDKSADNLPGTDLTTSSEKSEIRIFCDKAFSRLKGSDRNLPQIVRIQSLL
RRGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPARTVAFDHLRKFDGKE
FRQLLPGEYTQMAGRAGRRGLDKIGTVIVLCRDEIAEERDLKNVMVGSATKLESQFRLTY
IMILHLLRVEELKVEDMLKRSFAEFHAQKKLPERQQLLMRKRAQPKKSVECIKGEPAIEE
YFEMYSEAEMYSKQISESVMQSPVAQQYLIAGRVVVVRSQQGQDHLLGVVVKTPASNNKQ
YIVLVLTPDLPSTLQSQSGTGKPNDKKAPDFQILIPKSKRGLDDEYCPSVTSRKGSGIIN
IKLPHHGNAAGVNYEVRGVENKEFLCICNVKIKIDQVRLLEDVSAGAYSYTVQQLLGLKS
EGNKYPPALDPVKELKLKDVDLVEAYYKWSNLLQKMAQNKCHGCVKLDENIKLAGEMKRH
KEELERLEFQMSDEALQQMPDFLGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICT
ECLFENQMDDLEPEEAVAIMSAFVFQQKESKAPSLTPKLAQARKRLYDTAIRLGELQAQF
KLQIEPREYAEENLKFGLVEVVYEWAKGTPFADICELTDVPEGVIVRTIVRLDETCREFK
NAAAIMGNSALYKKMETASNVIKRDIVFAASLYITGI
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggatcgaatagaggccgcaaaggagttacctttcagggtcgggttcacgggccatagc
ggtcaccttacaatcgagcctctcccgccggtcgaacgccccaagcctctcgattcgctg
cctttcgttcttcctcctgcattcccggatgaaactcctgaaacaatacaacaatatata
aaggataaatatctcttacctcagttggatgctgatgaattcacccctgaaaaaatggga
aggcagtgggaatttgattggtttgacagagctaaaatccttccagagccttctctgcct
cgaactattattgttccaaaatgggaaccacctttcaggcgtccaaaaaacccaccaggt
ggacgatgggagccagagtctgtggagatagatgtatcggaacttacagcaggagctgag
gatttgggtgctttgccacaaattactggacctccaaaagattttgttagaggaagtgtc
aataaccgaccttttcgtccaggggggttggatggttcttcttctctgggaagggctctt
cctgatggtgcttccagtggcaaatgggtgcacgaggttcttgatggtggttatgcccaa
accattcctccaggcttcaaaaagggactagatcttggtgatcttgagatgcattcatct
tcatggaatgtttacgaggatcagagtgcagtcaatagcacatccaacaagaaggtgaat
gatttttccgtgcagtttgatgaattatttaagaaagcttgggaagaagacatgacagaa
tatgttgaagatggtcattcttctgagttgcaagctgaagtgaaagaagaattttctgtc
aaattagaatcacttgaaatagatactgaagtaaacaagccagaagttgctggtgaagtt
acagtgactgaaaaatcagttttggatgagattttggctgctgcatctggagtttcagct
ttaagattggatggagaaagagatggtagtggacatgaacaaacagaggcatgggctgtt
accggagacaacaaggaggttgtggaacgatttaatgatcttattcctgatatggcacta
accttcccattccaacttgatccctttcaaaaggaggccatctactatcttgaaagggga
gagtctgtttttgttgctgctcatacatcagcaggaaagacagtagtagcagaatatgca
tttgctttggcatccaaacactgcaccagagctgtttacactgctccaataaaaactatc
agcaatcagaagtacagggacttctgcgggaaatttgacgttggccttcttactggagat
gtcagcttgcggcctgaggcctcatgtctcatcatgactactgagatattgaggtctatg
ctctatagaggtgctgatatcattcgtgatatagaatgggttatatttgatgaagtgcat
tatgtcaatgatgttgaaagaggtgttgtttgggaagaagttattatcatgctaccaagg
cacatcaattttgtacttctgtctgcaacagtaccaaacacaattgaatttgctgactgg
attggcaggacaaaacaaaagaaaattcgtgtgacagggacaaccaaaaggccagtccct
ttggaacattgcctcttctactctggagagctgtacaaggtgtgtgagaatgaacaattt
gtgcctcagggatttaaagcagccaaagatgtatttaagaagaaaaacacaagttctgcc
attggtggcactggagctttccatggatcgtcttcagctgctaatgatagatctcggggt
cagagacgtgataacttttctcatggaaaacaccccaaaggaccccaaacttcagggaat
gttggtagtagctggggaaacaagaatagtgttggccagaatgttatggggctaaggagg
tcagaagcatccttgtggttgtcactcattaataaactgtcaaagaaatctctcttaccg
gtggttattttttgcttttcaaagacaagatgtgataagtctgccgataacctccctggg
actgatctcacaactagctccgagaaaagtgagattcgcatcttctgtgacaaagctttt
tcacggcttaagggatctgatagaaacttaccacagattgtcagaattcaaagtcttttg
cggaggggaattggagtgcatcatgcagggctactaccgattgtaaaggaagttgttgaa
atgcttttttgccgtggtgtagtgaaggttcttttttcaacagagacatttgcaatggga
gttaatgccccggctaggacagttgcgtttgatcacttaaggaagtttgatggcaaggaa
ttcagacaattacttcctggagagtatactcagatggctggccgtgctggaaggagagga
ctggataaaatcggtacagtaattgtgttgtgtcgtgatgaaatcgctgaagagagggat
ttgaagaatgttatggttggtagtgcaactaagcttgaatctcagtttagattgacctac
atcatgatcctccatctgcttcgtgttgaagagcttaaggtggaggacatgttaaaaaga
agttttgctgaatttcatgctcagaagaaattgccagagaggcaacaacttttgatgcga
aaacgtgctcagcctaagaaatctgttgagtgcataaagggtgaaccagcaattgaggaa
tactttgagatgtactcagaggctgaaatgtatagtaaacagatatcagagtcagtcatg
cagtccccggttgctcaacagtatcttattgctggaagagtggtggttgtaagatcacaa
cagggacaagaccacttactaggtgttgtggtgaaaacacctgcttctaacaacaagcaa
tacatagttttagtactgactcctgatttaccctcaacgttgcaaagtcaatcgggtacg
ggtaaaccgaatgataaaaaagctcctgacttccagatattgatacctaaatcaaagcgt
gggttagatgatgagtattgtccatcagtcacgtctcgcaaaggatcaggcattatcaac
attaagttacctcaccatggtaatgctgctggagtaaattatgaggttagaggtgttgag
aataaggagttcctctgcatatgcaacgtcaaaataaaaattgatcaagtccggcttctt
gaagatgttagcgctggagcatactcatatactgtccaacagctgctgggtctaaaatct
gaaggaaataagtaccctcccgccctagatccagttaaagagctgaagttgaaagacgtg
gatctcgttgaagcttattacaaatggagtaatcttttgcaaaagatggcacaaaataag
tgccatggatgtgttaagttggatgagaacattaaattagctggagaaatgaagaggcac
aaggaggaattggaaagattggagtttcaaatgtcagacgaggcacttcagcagatgcct
gactttctgggccggatagatgtattgaaggaaattggctgtatagatgctgatcttgta
gttcaaataaaaggtcgtgtcgcttgtgagatgaactccggggaggagctgatatgcact
gaatgcctgttcgagaatcaaatggatgatttggaaccagaggaagcagtagcaatcatg
tcggcctttgtgtttcagcagaaagagagtaaagcaccctccctcacgccaaagctcgct
caggctagaaagaggttgtacgacactgcaataagactaggggagctccaagcgcagttt
aaactacagattgagcccagggagtatgctgaagaaaatcttaagtttggcctcgttgaa
gtggtatacgaatgggcaaagggtactccatttgcagatatatgcgagctcacagacgtc
ccagaaggcgtgatagtgaggaccatcgtcagactggacgagacatgccgagagttcaaa
aacgctgctgcaatcatgggcaactccgcgctgtacaagaaaatggaaacagcttccaac
gttataaaacgcgatattgtcttcgcggccagcttgtacattaccggcatttaa
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