Ipomoea triloba (trilobed morning glory): 116004671
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Entry
116004671 CDS
T07384
Name
(RefSeq) pre-mRNA-processing factor 17-like
KO
K12816
pre-mRNA-processing factor 17
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116004671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
itr03041
]
116004671
Spliceosome [BR:
itr03041
]
Complex C
Other components
Step II factors
116004671
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_DCAF4
WD_LRWD1
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_NWD2_C
NBCH_WD40
Beta-prop_WDR75_2nd
Motif
Other DBs
NCBI-GeneID:
116004671
NCBI-ProteinID:
XP_031100672
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All DBs
Position
14:4524866..4529495
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AA seq
603 aa
AA seq
DB search
MDLLRSYADDDMDNQEQKSEEKPQSSNQSPNSQQLDHSGHSSPDSSPVRMSLTSKSAAPK
VDDTMLALTVAGGAARALSKPLDPTQHTVSYNPTYDQLWAPIYGPAHPYAKDGLAQGLRN
HKLGFVENAAIEPFVFDEQYNTFQKYGYAFDPSANHYVGDMDVLKKNDAISVYNIPQHEQ
KKRKLEKKKEMMENEQGEEEEEDVDMTEVDNPATEAWLRKNRKSPWAGKKEGLQTELTEE
QKKYAEEYAKKKGEEKGEREKGEALVEKSTFHGKEERDYQGRSWIAPPKDAKPQNDHCYI
PKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVR
DIWFSNDGTKFLTASYDKNIKYWDTETGKVISTFSTGKVPYVVRLNPDEDKQNVLLAGMS
DKKIVQWDMNSGQITQEYDQHLGAVNTITFVDDNRRFVTSSDDKSLRVWEFGIPVVIKYI
SEPHMHSMPSISPHPNGNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF
SPDGRFVLSGDGEGRCWFWDWKSCKVFRTLKCHDGVCIGAEWHPLEQSKVATCGWDGLIK
YWD
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggatctcttacgctcgtatgccgacgacgacatggacaaccaagagcagaaatccgaa
gaaaaaccgcaatcctccaaccaaagccctaattcccaacaattggaccattcgggtcac
tcctctccggattcatccccggttcggatgtcgctcacgtccaaatccgccgccccgaaa
gtcgacgacaccatgttggccctaacagtcgccggcggcgcagctcgggcgctttcgaaa
cccctggatccgactcaacacacggtgtcgtataatcccacttatgaccagctctgggcc
ccaatctacggccccgcgcacccttacgcgaaggacggcctcgcgcagggcctccgcaat
cacaagctggggtttgtggagaacgctgctattgagccgttcgtgttcgacgagcagtat
aatacgtttcagaaatacggttatgcatttgacccttccgcgaatcactatgtaggggat
atggatgttttgaagaagaatgacgcaatttcggtgtataatataccgcagcacgagcag
aagaagaggaagctcgagaagaagaaggagatgatggagaatgagcagggagaggaggag
gaagaggatgttgatatgactgaagtggacaatccggccactgaggcgtggttgaggaag
aataggaagagcccttgggctgggaagaaagagggtttgcaaactgagctgactgaggag
cagaagaagtatgctgaagagtatgcgaagaagaagggcgaggagaaaggtgaaagagaa
aagggagaggctttggttgagaagagtacttttcatggtaaggaagagagggattatcag
ggtaggtcatggattgcacctcctaaggatgccaagccacagaatgatcattgttatatt
ccaaagagattggtgcatacttggagtggccacacgaaaggagtttcagctattaggttc
ttccccaagcatggccatttgattctttctgctggaatggacaccaaggtgaagatttgg
gatgttttcaattcaggcaagtgcatgaggacttacatggggcactcaaaggcggtgaga
gatatttggtttagcaatgatggaactaaatttttaactgctagctatgacaaaaatatc
aagtattgggatacagagactggaaaggtgatatctacattttccacagggaaggtacct
tatgtggtgagacttaatcctgatgaggataaacagaatgtgcttttggcgggtatgagt
gataagaagatagtacagtgggatatgaactctgggcagattactcaagagtatgatcag
catcttggagcagttaatacaatcacatttgtggatgataataggaggtttgtaacttct
agtgatgataaatccctccgggtttgggaatttggcattcctgttgttataaagtacatt
agtgaaccccatatgcattctatgccctccatttcaccacatccgaatgggaactggctt
gcggctcagagtttggataatcaaattcttatctatagcaccagggagaggttccagctc
aacaagaagaagagatttgctggacatattgtagctgggtatgcctgtcaggttaatttc
tcacctgatgggcggtttgtcctgtcaggagatggtgaaggtagatgctggttctgggat
tggaagagttgcaaagtcttcagaactctcaagtgtcatgatggggtatgcattggtgct
gagtggcatcctttggagcaaagtaaagttgctacctgtggctgggatggcttgatcaaa
tactgggactaa
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