Ipomoea triloba (trilobed morning glory): 116004994
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Entry
116004994 CDS
T07384
Name
(RefSeq) polyadenylate-binding protein 7-like
KO
K13126
polyadenylate-binding protein
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03015
mRNA surveillance pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116004994
09123 Folding, sorting and degradation
03018 RNA degradation
116004994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116004994
03041 Spliceosome [BR:
itr03041
]
116004994
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
116004994
mRNA cycle factors
Stress granule specific factors
116004994
Spliceosome [BR:
itr03041
]
Complex C
Other components
Complex C specific factors
116004994
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_10
RRM_occluded
RBD_DEAH11
RRM_RdRP1_2
RRM_5
YflT
RRM_3
OB_RNB
Motif
Other DBs
NCBI-GeneID:
116004994
NCBI-ProteinID:
XP_031101065
LinkDB
All DBs
Position
14:complement(22044067..22047256)
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AA seq
325 aa
AA seq
DB search
MACIDSIIEIEPRGGELTLCASTEVPAPALWLFGTSETCWQHTLYVGDLHPETTAADLEA
AFSVIGPLDSFAVRKDAVSGKSLCYAFVNFFCVSHALNAMKRLNHTTLRGKPMRITWWQK
DSELRKSGIGNVFVKNIAPSITSAQLESIFRKYGLIVSCKIAEEENGKSKCYGFVQFETQ
NSAISAISALNGAVFEGKELHVSTFKKKEERVMDAFNEQKFTNLYVKNFGLNMTEDLLRE
KFSRYGNVKSAAIMRDEEGNSKGFGFVNFDSDEDARKAVEALNGQLIGSKKLFVGRALKK
AEREILLKMAQTREDEMGGEDVSSV
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atggcctgtattgactctatcattgagatcgagcctcgtggaggtgaattgactctgtgt
gcttcaacagaggtgccagcaccagcactttggctgtttgggacgtcagaaacttgttgg
cagcatactctctacgtcggtgatcttcacccggaaaccacagcagcggacctcgaggcc
gcattttctgtgattggcccgctggattctttcgcggttcgcaaagatgccgtgtctgga
aaatctctctgctatgctttcgtcaacttcttttgtgtctctcatgctttaaacgctatg
aaacgcctaaaccatacaaccctgagaggaaagccgatgaggattacatggtggcaaaag
gattcagagctaagaaaatctgggattgggaatgtttttgtcaagaacattgctccttct
atcaccagtgctcaattagagagcatctttaggaaatatggcttaatagtgtcctgcaaa
atcgccgaggaggaaaatggaaagagcaaatgttatggattcgttcagtttgaaacacag
aattctgccatttctgctatcagtgccctcaatggagcagtgtttgaagggaaggaatta
catgtgtccacatttaagaagaaagaagagagggtgatggatgcatttaatgagcaaaaa
ttcactaatctatatgtgaaaaacttcggtctcaatatgacagaggacctcttaagagag
aaattctccagatatgggaacgtcaaaagtgctgcgattatgagggatgaagaagggaat
tcaaaaggctttggctttgtcaattttgattcggatgaagatgctaggaaggcggttgaa
gctctcaatggtcaactaataggatcaaaaaagttatttgttggaagggcactgaagaag
gcggaaagggaaatactcttgaaaatggcccaaacacgcgaggatgagatgggaggagaa
gatgtgtcgagtgtataa
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integrated database retrieval system
