Ipomoea triloba (trilobed morning glory): 116005106
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Entry
116005106 CDS
T07384
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116005106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
itr03041
]
116005106
03009 Ribosome biogenesis [BR:
itr03009
]
116005106
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116005106
Spliceosome [BR:
itr03041
]
Complex A
U1 snRNP components
U1 related factors
116005106
Complex B
116005106
Ribosome biogenesis [BR:
itr03009
]
Eukaryotic type
Pre-60S particles
Helicases
116005106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
116005106
NCBI-ProteinID:
XP_031101209
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All DBs
Position
14:21312032..21317885
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AA seq
565 aa
AA seq
DB search
MSYVPPHLRNSSAATTVVSNGGDHLHSKLNSRQLPSFTQSKNGFTSNGEYCSNDSGRSSC
ETVNYLSPRGLVAPDPVFPQWKPSERVLLLKLEQIEEIRLRLNVDVAVALDSHPALAPVE
SFTDMCLHPSIMKDIALHNYTIPTSVQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQ
HCLAQPPLRRGDGPLALVLAPTRELAQQIETEVKAFSRSLDSFKTAIVVGGTNIGEQRSE
LRAGVNIVVATPGRLIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMHNLPKKH
QTLLFSATMPAEIEALAQEYLTDPVRVKVGNVSSPTANVAQILEKVPENEKIDRLLDLLV
EESAQAEKSGHPFSLTIVFVERKTKCEEVAEALMKQGLLATALHGGRSQNEREAALRDFR
RGPTSILVATDVASRGLDVNGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDR
DMYLVAQIRKAIADVGSGNTVTFATGKTARRKEREAAAAHKEANTALSKLSLMGSTPINV
EDKYRHMFAPAMARKEGAADGAWDD
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatgtacctcctcacctgagaaactcctccgccgccaccactgtggtgagcaac
ggcggcgatcacttgcactcgaagctcaactctcgccaattgccgtcatttactcaatcg
aagaacggttttaccagtaatggtgaatactgctcgaatgattccggccggagctcatgc
gaaaccgttaattacttgtcaccgagaggtttagtcgcgcctgaccccgtctttcctcag
tggaaaccgtccgaacgtgttctcctgcttaaacttgaacagatagaagagattcgcttg
agacttaatgttgatgttgcagttgctctggattcacatcctgcgcttgcacctgtagaa
tcgttcactgatatgtgcttgcacccgagcatcatgaaggatattgcactgcataattat
actatccccacctctgttcaagctcaagccatgccagttgcccttagtgggagggacctt
ttgggttgtgcagaaactgggagtggaaaaactgctgcattcactataccaatgatacag
cactgcctagctcagcctcctcttcggcgtggtgatggaccattggcattggtattggca
cctacaagagagcttgcacaacaaatagaaacagaggttaaagctttcagtagatctctt
gattcctttaagactgcaattgtagtgggagggacaaacattggtgagcagaggtctgag
cttcgagcaggggtgaacatagttgttgctactcctggaagacttattgaccacttacaa
caaggaaatacctccctttccaggatatcttttgttgtattggatgaggctgacagaatg
cttgatatggggtttgaacctcagataagagaggtgatgcacaatcttccaaaaaagcat
caaactttgttgtttagtgcgaccatgccagcagagattgaagcactggcacaggaatac
ttgactgacccagtgcgggtaaaggttggaaatgtgagcagtccaacagcaaatgtagct
cagattttggagaaagtacctgaaaatgagaagattgaccggcttctagatcttcttgtt
gaggagtctgctcaagctgaaaaatctggccatcccttttcactgaccattgtattcgtg
gaacgaaagacaaagtgtgaagaagttgcagaagcattgatgaagcagggattgcttgca
actgcacttcatggtggccgtagtcaaaacgaaagagaggctgcccttcgtgattttaga
cgtggtcctaccagtatcttggttgccactgatgttgcatctcgtggattggatgtcaat
ggggttgctcatgtaattaatctagatcttccaaagaccatggaagattatgttcatcgg
attgggaggaccggtcgtgcaggatcaacaggccaagccacatcattttatactgatcga
gatatgtatcttgtggcacaaataaggaaagcaattgcagatgttgggtctggcaatact
gttacttttgcgactggaaagactgccagaaggaaggagagagaagctgcagctgctcat
aaggaagcaaatactgcactctcaaaactgtccttaatggggtccactccaataaacgtt
gaggacaagtataggcacatgtttgcccctgcaatggccaggaaagagggagctgcagat
ggtgcttgggatgattga
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