Ipomoea triloba (trilobed morning glory): 116005554
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Entry
116005554 CDS
T07384
Name
(RefSeq) pre-mRNA-splicing factor prp12 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116005554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
itr03021
]
116005554
03041 Spliceosome [BR:
itr03041
]
116005554
03036 Chromosome and associated proteins [BR:
itr03036
]
116005554
Transcription machinery [BR:
itr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
116005554
Spliceosome [BR:
itr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
116005554
Complex B
116005554
Complex C
U2 SnRNP specific factors
116005554
Chromosome and associated proteins [BR:
itr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
116005554
TFTC complex
116005554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
116005554
NCBI-ProteinID:
XP_031101632
LinkDB
All DBs
Position
15:1538951..1548819
Genome browser
AA seq
1390 aa
AA seq
DB search
MAVSEEESSSSAPASSSRSRSAAMNGGCYLAKTVLRGSVVLQVVYGHIRFPSSNDVVFGK
ETSIELVIIDDDGVVQSICEQPVFGTIKDLAILPWNDRFHSRSSQIHGKDILVVISDSGK
LSFLAFCNEMHRFFPLTHVQLSSLGNSRNQIGRMLAIDSNGCFIAASAYENKLALFSVST
SCGNDIIDKKICCPPDNHEDIKTVNGVTEICGTIWSMCFISKDLRQPSKEHNPVLAILLN
RERTYRNELMLLEWKPKENLLHVIYQYVEAGPFAHHIVEVPHSYGLVILFRAGDAVLMDC
KDAHNPYSLYRISLNFTPSVEEQNFVEPTIRIPDIIDEEGMYNVAASALLELSDINKSDP
MNIDDDSSTKPGTNYVCSWTWDSANKNNPRMIFSADSGQLFMVEIFSDSDGIKMSLSDCL
YKGLPAKELLWVESDFIAAIVEMGDGMVLKLDDGRLVYRSPIQNIAPILDMSVVDYYNEK
HDQMFACCGMAPEGSLRIIRSGISVEKLLKTAPIYQGITGTWTVKMKVTDRYHSFLVLSF
VEETRVLSVGVSFSDVTDSVGFQPDVSTLACGLMADGLLVQIHKDAVRLCVPIASAHPEG
VPLSSPVGTSWSPNDTRISLGAVGYNVIVVATSSPCFLYVLGLKSLSAYQYELYQLQHVR
LQDELSCISIPQKQLEQKPLVSPMSSTNDAPLAAFPAELDLSSTFIIGTHKPSVEVLSFS
LDKGLQVIAIGSISLTNTLGTTITGCVPQDVKLVLVDRPYILSGLRNGMLLRFEWPSTSN
ISLLHSSNLQHFTSSNLANSTTPFTSVNYKAMPTSSSTLFDKTRDSFPIHLQLIAVRRIG
ITPAFLVPLSDSLDADVIALSDRPWLLQTARHSLSYTSISFQPSTHATPVCSTECPKGIL
FVADNSLNLVEMVSSKRLNVQKFNLDGTPRKVLYHSESKLLVVLRTDLNDDSSSDVCCID
PLSGSVVSSFKLDPGETGKCMELVKSGNDHVLVVGTSLSSGPVIMPSGEAESTRGRLLVL
CLEHIPNSDSGSIAFFSRAGSSSQRTSPFCESGGYATEQLSGSSLCSSPDDNSCDGIRLE
ESEPWQLRLTYSNIWPGVVLAICPYLDRNFLASAGNAFYVCGFSSDNSQRVRRLAGGKTR
FMIMTLTAHLTRIAVGDCRDGIMFYSYQEDARKLEQLYCDPVQRLVADCILMDVDTAAVS
DRKGSVAILSCLNHSEENSSPECNLAVVSSFYMGEIAMRIRKGSFSYKLPADDVLRGCRD
TNGVSDVSQSSIMASTLLGSIITFVPLTRVEYELLEAVQARLVIHPLTAPILGNDHNEFR
SRESSAGALRVLDGDMLAQFLELTSMQQEAVLALPLGSHNTIMLNSKPLPAPITVSQVVR
LLERVHYALN
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttcggaggaggaatcatcgtcgtcggcgccggcgagtagctccaggtcacga
tcagcagctatgaacggaggatgttatttggcgaagacggtgctaagaggaagcgttgtt
ctccaagtcgtctatggccacatccgcttcccttcctcaaacgacgttgttttcggcaag
gagacatctatagaattggtgatcatagatgatgatggagttgtacaatcaatatgtgag
cagccagtgtttggcactataaaagaccttgccattctgccttggaatgatcgatttcat
tctcgaagctcacagattcatggcaaagacattctggttgttatttctgattcaggaaag
ctatcatttcttgcattttgcaatgaaatgcacaggtttttcccattaacacatgttcaa
ctctcttctcttgggaattcaaggaatcaaattggaaggatgctagccattgattctaat
ggctgtttcattgctgctagcgcatatgaaaacaaattagctcttttctctgtctcgact
tcttgtggcaatgatattattgataagaaaatctgttgtcctcctgacaatcacgaggac
attaaaactgtaaatggtgttactgaaatctgtggtaccatatggagcatgtgctttatc
tcaaaagatctccgccagccaagtaaggagcacaaccctgtattagcaattcttctgaat
agggagagaacatataggaatgagctcatgttgttagaatggaaacctaaagaaaatttg
cttcatgtgatatatcagtatgtagaagctggaccatttgcacatcatatagttgaagtt
cctcattcatatggactagttatactgttcagggctggagatgccgtcttaatggattgc
aaggatgctcataatccttattccctatatagaattagtttaaatttcactccttcagtg
gaagagcagaattttgtggaacctacaattaggattcctgatatcattgatgaagaagga
atgtataatgttgctgcctctgccttattggagctcagtgacataaacaaaagtgatcca
atgaatattgatgatgatagcagcaccaaaccaggtactaattatgtctgctcatggact
tgggactctgcaaataaaaacaacccaaggatgatttttagtgctgattcaggtcaactt
tttatggttgagattttttctgattctgatggcatcaaaatgagcttatctgattgcctt
tacaaagggctaccagcaaaagagctattgtgggtggaaagtgattttatagcagctatt
gttgagatgggtgatgggatggttttaaaattggatgatggcaggctagtttacagaagt
ccaatccagaacattgcaccaatattggatatgtcagttgtggactactacaatgagaaa
catgatcaaatgtttgcttgctgcgggatggcacctgaagggtcattgcgaattattcga
agtggtatcagtgtggagaagttgttgaaaactgctcccatttatcaaggcataacgggc
acttggactgtcaaaatgaaagtcactgatagatatcattcattccttgtgctctcattt
gttgaagaaaccagagtgctttcagttggggtaagcttttctgatgtaactgattctgtg
ggtttccagcctgatgtcagcaccttggcatgtggtctcatggctgatggtttactggtg
caaatacacaaagatgctgttagactttgcgtgcctattgcatctgctcatcctgaaggt
gttcccctatcttcccctgttggaacatcatggtcgcctaatgatacaagaattagtttg
ggtgcagttgggtataatgtgatagttgtggccacttctagtccatgctttttgtatgta
cttggtctgaaatcattatcagcttatcaatatgaattgtaccagttgcaacatgtaaga
ttgcaggatgagttgtcctgcatttccatccctcagaaacagcttgagcaaaaaccatta
gtttcaccaatgagcagcacaaatgatgcccctttggctgcttttccggcagagcttgac
cttagtagtacctttattattggtacacacaaaccttcggtagaagtactgtccttttcg
cttgataagggccttcaagttattgctataggatccatatcattaacaaacactctagga
actaccatcactggctgtgttcctcaggatgtaaagcttgtacttgttgatcgaccctat
attctttcaggattgaggaatggtatgctactcaggtttgagtggccttctacctctaat
atttctttgctacactcatctaatctgcagcatttcaccagttctaatttggcaaattct
actacaccattcacatctgtaaattacaaggccatgcctacttcctcatccactttattt
gataagacaagggacagttttcctattcatcttcaactaattgcagtccgtcgcataggc
atcaccccagcttttttggttccattgagtgactctcttgatgctgatgtaattgcactg
agtgataggccttggctattacaaactgcaagacatagcctttcctatacatccatctcc
tttcagccttccacacatgccactcctgtttgttccactgaatgtccgaagggaattcta
tttgttgctgacaacagtcttaatttggtggagatggtgtctagtaaacggcttaatgtg
cagaagtttaaccttgatggcactccacgcaaggtcttatatcatagtgaaagcaagtta
ttggttgtcttgaggactgatctcaatgatgattcatcctctgatgtttgctgtatagat
cctctaagtggatcagtggtatcctcatttaaactggatcctggggagactggtaaatgc
atggagttggtgaaatctgggaatgatcatgttttggtagttggaactagcctctcatca
ggacctgtaataatgcctagtggtgaagctgaaagtactaggggtcgtttgttagtcctc
tgccttgaacatattccaaattcagatagtggttcaatagcatttttttcgagagctgga
tcatcttctcaacgaacttcacccttttgtgaaagtgggggatatgcaactgaacagctg
tctggtagtagcctttgtagcagccctgatgacaacagctgtgatgggattagacttgaa
gaaagtgagccatggcagttacgtttaacatattcaaacatttggccaggagtggttctt
gctatctgcccttaccttgatcgtaatttcttggcttcagctggtaatgctttttatgta
tgtggcttctccagtgataattctcaaagggtgagacgactagcgggagggaaaacacga
ttcatgatcatgactttaactgcacacttaactagaattgctgttggtgattgtagggat
ggtatcatgttctactcatatcaggaggatgcaagaaaactggaacagctttactgtgat
cctgtccagcggttagttgctgattgcattcttatggatgttgatacagctgcagtttct
gatcgaaaggggagtgttgccatcttgtcctgtttaaatcattcagaagagaattccagt
cctgaatgcaacttagctgtagtttcatcattttacatgggtgaaattgcgatgcggatc
cgaaaaggctcattctcctacaaacttcctgctgacgatgttttgaggggctgtcgagac
actaatggtgttagtgatgtgtcacagagtagcattatggctagcacactattaggaagc
ataattacttttgttcctctgacaagggtggaatatgaactgttagaagcagtacaagca
aggcttgttattcatccattgactgctcctatactcggaaatgaccataatgagttccgc
agccgtgaaagttcggctggggcattgagggtacttgatggtgatatgcttgcccagttc
ttggagctgactagtatgcaacaagaggctgtattagcactaccccttggctcacataat
acaatcatgttaaattcaaagcccttgcctgctcctattactgttagtcaggttgtgcgt
ctgctggagcgggttcactatgcactgaattga
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integrated database retrieval system
