Ipomoea triloba (trilobed morning glory): 116005713
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Entry
116005713 CDS
T07384
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116005713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116005713
03012 Translation factors [BR:
itr03012
]
116005713
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116005713
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116005713
Translation factors [BR:
itr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
116005713
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
AAA_22
nSTAND3
ATPase
AAA_19
AAA_14
T2SSE
AAA_16
PhoH
ABC_tran
NACHT
AAA_23
Myosin_head
Motif
Other DBs
NCBI-GeneID:
116005713
NCBI-ProteinID:
XP_031101813
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All DBs
Position
15:complement(12967229..12981350)
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AA seq
716 aa
AA seq
DB search
MELYNVQRFNHHAVPLPTPSYLDKKWQTIVVSAHLLWQNAVPVIRSSDQLTTFEFTSNDA
KNFKKPNQNGLAKLKKQPKRISKVEGFSWDAPEDLHIHFSAIFLYPAAHEVRIVGSHICR
RALLSSGNVNLCRSQWRVFWLGERRFCGYAVEQFSDDEYECDYESHPASSSVANIDEWKW
KLSLLSRREEQEVVSRDKRDRRDYEQISNLAKRMGLYSEIYGKVVVISKVPLPNYRPDLD
DKRPQRENRFRNLFGHLPYNSCLTSNIYLSFLVSIDDLRFSHSILLLGNVCPDGMQESPE
GHKMIGFRKSLPSFKEKERLLQAIACNQVVVISGETGCGKTTQLSQYILESEIESGRGAF
CSIICTQPRRISAMAVGERVATERGEPLGESVGYKVRLEGMKGKNTHLLFCTSGILLRRL
LSDRNLDGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNADLFSGYFG
GAPTIHIPGFTYPVRAHFLEDVLETTGYKAVLCHICRKERPGAVLVFMTGWEDISCLRDQ
LKAHPLLGDPNRVLVLTCHGSMATSEQKLIFERPPQNVRKIVLATNMAEASITINDVVFV
VDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQSGECYNLYPQCVYEAFAEY
QLPELLRTPLNSLCLQIKSLQVGSIAEFLSAALQPPEPLAVSSYSSLCRVKCFKCY
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggaattgtacaatgtccagaggtttaatcaccatgctgtgccactgccaacaccaagc
tacttggataaaaaatggcaaacaatcgtagtatcagcacacctcttgtggcaaaatgca
gtacctgtaatcagaagttcggatcagttgacgaccttcgagttcaccagcaatgatgcc
aaaaatttcaagaagccaaaccaaaacggattagcaaagctgaaaaagcaaccaaagcga
attagcaaagttgaaggtttctcttgggatgcaccagaagatcttcacattcacttctca
gctattttcttgtaccctgcggcccacgaagtccgaatagtcggttcacatatctgccgg
cgtgctttactttctagcggcaatgtgaacttatgcaggtcccagtggagggtattctgg
ctgggggaacgccgcttttgtggctacgccgttgagcagttttctgatgacgaatacgaa
tgcgattacgagtcccatccggcatcatcatcagttgccaacattgacgagtggaaatgg
aaacttagcttactatcgcgcagagaggaacaagaagttgtatctagagataaaagggat
agaagagactatgagcaaatatctaacctcgccaaaaggatgggcctatacagtgaaatt
tatgggaaagtagtggttataagcaaggttcctcttccgaactacagaccagatcttgat
gataagcggcctcaaagggagaataggttcaggaatctctttgggcatttaccttataac
agttgccttacaagcaatatttacctttcctttttggtttcaattgatgatttacgtttt
tctcattcaatccttttacttgggaatgtttgtcctgatggaatgcaggagtcacctgaa
ggccacaaaatgataggttttcggaaatctcttccatcatttaaggaaaaagaaaggttg
cttcaagcaattgcttgcaatcaggttgtggtaatttctggtgagactggatgtggtaag
actacccaactctctcagtacattttggaatctgaaattgaatctggtcgtggtgcattc
tgtagcataatttgcacgcagcctcgaagaatatctgcaatggctgttggagaaagagtg
gctacagagaggggtgaacctcttggagaatctgttggttataaagtgcgattggagggg
atgaaaggaaaaaatacacatcttctcttttgtacaagtggtattttgctacggcggcta
ttgagtgatcgcaatcttgatggtattacccatgtctttgttgatgagattcatgagcga
ggcatgaatgaagacttcttactgattgtgctaaaggatcttcttccaagacggcgagat
ttgagactgattttaatgagtgctactcttaatgctgatttattttccggttattttgga
ggagcaccaacgattcacattccaggcttcacataccctgtaagagctcattttcttgaa
gatgtactggaaacgacaggatataaggctgtcttgtgtcatatatgtcgaaaggagaga
ccaggtgctgtgttagtatttatgactggttgggaagatattagctgtttgagggatcaa
cttaaagctcatcccctcttgggtgaccccaacagagtattggtgcttacatgccatggt
tcaatggcaacttcagagcagaaactcatatttgagaggccacctcaaaatgttcggaaa
attgtacttgctacaaatatggctgaggcgagtattactattaatgatgtagtgttcgta
gtcgattgtggaaaagcaaaggagacaacttatgatgcactcaataatacaccttgtttg
ctaccttcgtggatatcacaagcctctgctagacagagaaggggtagggctggtcgtgtg
cagtcaggcgagtgctacaacttgtacccacaatgtgtttatgaagcttttgcagagtat
caattacctgaacttctaagaactcctctcaattctctttgcctgcaaataaagagtttg
caagttggaagtattgcagaatttctctctgcagctcttcaaccaccagaaccattggct
gtaagtagttactcttctttatgtcgtgtgaaatgtttcaaatgttactag
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