Ipomoea triloba (trilobed morning glory): 116006006
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Entry
116006006 CDS
T07384
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116006006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116006006
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116006006
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
116006006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
116006006
NCBI-ProteinID:
XP_031102110
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All DBs
Position
15:22254652..22259847
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AA seq
288 aa
AA seq
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MVGLSVGEKNFLKGGIAQDLRTDGRKRLAYRLIYVEIGVIPQASGSARVKMGATDVIASV
KAELGKPNPSHPDKGRVFIYVDCSSTAEPTFEGRGGDELSAELSTALQRCLLGGRSGAGA
AIDLSSLSVVQGKVCWDLYIDGLVVSADGNILDALGAAIKAALSNTCIPRVQVCADPSSN
EQPEVDVSDEEFVQFDTSGVPVIVTLTKVGRHCIVDATSEEESQMSSAVSISVNREGHVC
GLTKRGGAGLDPADILDMVNKAQVVGSELINDLDSKIAAAEACEEEES
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atggtagggttatctgtaggagaaaagaacttccttaaaggtggtattgctcaagatttg
cgaacagatggtcggaaacgattagcttatcgactcatttatgttgaaattggggtcatc
cctcaggcaagtggttcagcaagagttaagatgggcgcaactgatgtcattgccagtgtc
aaggctgaacttggaaaaccaaatccatctcaccccgacaagggaagggtttttatttat
gtagactgcagttccacagcagagccaacttttgagggcagagggggtgatgagttgtct
gcagaactttcaacagctcttcagcgatgtctgcttggtggaagaagtggggcaggggct
gcaattgatctttcatctctctcagttgtgcaaggaaaagtttgttgggatctatacata
gatggtcttgtggtcagtgcagatgggaatatactcgatgcccttggtgctgcaattaag
gctgccttgagcaatacatgtattccaagggtccaagtatgtgcagatccttcgtctaat
gaacagccagaagttgacgtgagcgatgaagaatttgtccaatttgacactagtggtgtc
ccagttatagtcactttgacaaaggttggaaggcactgcattgtagatgcgacctcggaa
gaggaatctcaaatgagctcagcggtgtctatttcagttaacagggaaggtcatgtgtgc
gggttgactaaacgaggtggcgcgggtttagatccagccgacatacttgacatggtaaat
aaagcacaggttgtgggcagtgagttaataaacgatttggattctaagatagctgctgcc
gaagcgtgtgaggaagaggaatcatga
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