Ipomoea triloba (trilobed morning glory): 116006473
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Entry
116006473 CDS
T07384
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116006473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116006473
03012 Translation factors [BR:
itr03012
]
116006473
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116006473
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116006473
Translation factors [BR:
itr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
116006473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
dsrm
HA2_N
Helicase_C
Motif
Other DBs
NCBI-GeneID:
116006473
NCBI-ProteinID:
XP_031102719
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All DBs
Position
15:complement(12984239..12990601)
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AA seq
554 aa
AA seq
DB search
MAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQSGECY
HLYPQCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIAEFLSAALQPPEPLAVQNAIG
FLKMIGALDEHENLTYLGKYLSVLPVDPKLGKMLVMGAIFRCFDPILTIVAGLSVRDPFL
LPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAI
HSLRKQFSFILKDAGLLEADNATNNKLSHNQSFVRAVICSGLYPGITSVVHRETSMSFKT
MGDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGNLGNGA
TAGHLKMLDGYLEFFMDPSLAECYMNLKEQLDELVQKKLEDPGKDMHKEGKYLMLAVQEL
VAGDQCEGRFVFGRESKKPKESSNNDRFTKDGTNPKSLLQTLLMRAGHHPPKYKTKHLKT
NEFRALVEFKGMQFVGKPKRNKALAEKDAAIEALAWLTHTSDKKGEEDDNSPPDVTDNML
KLLGKRRRSKRRSS
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggctgaggcgagtattactattaatgatgtagtgttcgtagtcgattgtggaaaagca
aaggagacaacttatgatgcactcaataatacaccttgtttgctaccttcgtggatatca
caagcctctgctagacagagaaggggtagggctggtcgtgtgcagtcaggcgagtgctac
cacttgtacccacaatgtgtttatgaagcttttgcagagtatcaattacctgaacttcta
agaactcctctcaattctctttgcctgcaaataaagagtttgcaagttggaagtattgca
gaatttctatctgcagctcttcaaccaccagaaccattggctgtacaaaatgctattgga
tttttgaagatgattggtgcattagatgaacatgagaatcttacgtatctgggtaaatat
ctatcggttcttcctgtggatcctaagcttgggaaaatgctagttatgggtgctattttc
cgttgctttgatcccattttgaccattgttgctggtcttagtgtcagggatccttttctt
ttgcctcaggataagaaggatttagcagggacagcaaagtccagattctcagcaaaggac
tatagtgaccacatggctcttgtccgtgcctatgaaggatggaaggatgctgaaagagaa
ggatctgcgtatgagtattgttggagaaacttcctttccgctcaaactcttcaagctatt
cattcccttcgcaagcagttctccttcatcttaaaagatgctggattgcttgaagcagac
aatgcaactaataacaagctaagtcacaatcaatcatttgtccgtgctgtcatatgctct
ggtttatatcctggaattacttctgtagtgcacagagagacctcaatgtctttcaagaca
atgggtgatggtcaagttttgctatatgcaaattctgtgaatgcacgctatcaaacaatt
ccatacccttggttggtgttcggtgaaaaggtgaaggtcaatactgtcttcatacgcgat
tctactggagtatctgattcaattttaatcctttttgggggtaatcttggcaatggtgct
acggctgggcatttgaaaatgttggatggttatctagaattcttcatggatcccagtttg
gccgagtgttacatgaacctcaaagagcagcttgatgagcttgtgcaaaagaagctcgag
gatcctggcaaggacatgcacaaggaaggtaaatacctcatgcttgcagttcaggaactg
gtggcgggggatcaatgtgaaggacgatttgtgtttgggcgagagagcaagaagcctaaa
gagtctagtaacaatgaccggtttacaaaggatgggacaaaccccaaaagcttattgcaa
acgcttttgatgagagctgggcaccaccctccaaaatataaaacaaagcatctgaagaca
aatgagttcagggcactggtggagttcaagggaatgcagttcgtgggtaaaccaaagaga
aacaaagctctggccgagaaggatgctgcaatcgaggcattggcatggttaactcacact
agtgacaagaaaggtgaagaagacgacaattccccacccgacgtgaccgacaacatgctg
aaactcctcggtaagcgtcggaggtcaaaacgacgctcaagttga
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