Ipomoea triloba (trilobed morning glory): 116006643
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Entry
116006643 CDS
T07384
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116006643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116006643
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116006643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Agglutinin_C
Motif
Other DBs
NCBI-GeneID:
116006643
NCBI-ProteinID:
XP_031102952
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Position
15:18163352..18168125
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AA seq
474 aa
AA seq
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MAMEPGKLFVGGISWDTNEGRLKEYFQTFGEVVEAVIMKDRATGRARGFGFVVFEDPSVA
ESVVREKHMIDGRTVEAKKAVPRDDQHMNRNSVNIPSFPGSIRTRKIFVGGLASSVSESD
FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKMFHELNGKMVEVKRA
VPKELSPGPNRSPLSGYNSGLNRVNSFPNGYTLGHSLSSLGGYGVRMDRFSPTVVGRSGY
SLFNLSNYCTRPTLNSPLNSNFAETGNLSSNIGYGGALNSFSGGLPNRYNTLIGNASGGI
GSGSVLKSASWNLWDSENLSYSTNSANFVGSGSGNSGLAAPFGGLGTIWGTSSISSQTGR
NGSFDSDNFTYNNGGSNFASGGGYAQNSGNGPSAISSYAATENVYSRDLGNLYGTGNCSF
FEDPTPHSSSPGLEVSGSFGYGLESISSDVMPNNSRGCVGGYTVTNRSNGGIAA
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggagcctggaaaattgtttgttggagggatttcatgggacaccaatgagggc
cgtctcaaagagtatttccaaacatttggagaagtagttgaggcagtcatcatgaaggat
cgtgccacaggccgtgcccgcggttttggttttgttgttttcgaggatccttctgttgct
gaaagtgttgtcagagaaaaacacatgattgatggcagaactgtagaggcaaagaaggct
gtacctagggatgatcaacacatgaatagaaatagcgtaaatataccatcttttccaggt
tccatccgaacaagaaagatttttgtaggaggtttggcctcctcagtgtccgagagtgac
tttaaaaagtattttgatcaatttgggacaatcactgatgttgtagtgatgtatgaccac
aacacacaaaggcctagaggttttgggttcatcacttatgattcggaggaagcagtagat
agagttctgcacaaaatgtttcatgaacttaatgggaaaatggttgaagtcaagcgagct
gttcctaaggagttatcaccgggaccaaaccggagtccattaagtggatataactctggt
ttgaacagagtaaacagtttcccgaatggatacactctaggtcacagtctaagttcacta
ggaggttatggagtaagaatggatagatttagtccaactgttgttggtcgtagtggatat
tcattgtttaacctgtcaaactattgtacaagaccgactctaaactccccattgaattca
aactttgcggaaactggaaatttgagttctaatattggatatgggggtgctctaaattcc
tttagtggtgggctaccaaataggtacaatacgctaattggtaatgcttcaggggggatt
ggaagtggttctgtgttgaagtcagcatcttggaacctgtgggacagtgagaatcttagt
tatagcactaattctgccaactttgttggctcaggaagtgggaacagtggattggctgct
ccctttggaggtcttggaacaatttggggtacctcctccatttcaagtcaaactggaagg
aatggttcttttgacagtgacaacttcacttacaacaatggaggcagtaactttgctagt
gggggaggatatgcacaaaatagtggtaatggtcctagtgcaatatcctcatatgctgca
acagaaaatgtttatagcagggatttgggaaacttgtatgggactggaaactgctcattc
tttgaggatccaacaccgcattcatcatctccagggcttgaagtttctggttcttttggt
tatgggcttgaaagtatatcctcagatgttatgcctaataactcgcgtggttgtgttggt
ggttatactgttacaaatagatcgaatggaggaattgctgcttag
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