Ipomoea triloba (trilobed morning glory): 116006881
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Entry
116006881 CDS
T07384
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03013
Nucleocytoplasmic transport
itr03015
mRNA surveillance pathway
itr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116006881
09122 Translation
03013 Nucleocytoplasmic transport
116006881
03015 mRNA surveillance pathway
116006881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116006881
03041 Spliceosome [BR:
itr03041
]
116006881
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116006881
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116006881
Spliceosome [BR:
itr03041
]
Complex C
Other components
EJC/TREX
116006881
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116006881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
116006881
NCBI-ProteinID:
XP_031103246
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All DBs
Position
15:22426218..22431385
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AA seq
428 aa
AA seq
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MGENKENDAYEEELLDYEEEDEKAPDSVAAKVNGESAKKGYIGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPIAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNITIHKDLLKNECPHIVVGTPGRILA
LAREKHLSLMNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEMEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSSSDSGVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaacaaggagaacgacgcttacgaggaggagcttctcgactacgaggaagaa
gacgaaaaagccccagattccgtagccgctaaagtcaacggcgagtccgccaagaaagga
tatattggaattcacagctccggtttcagagattttctactaaagccagagctactgcga
gccattgtggattcagggtttgagcatccatctgaagtgcaacatgaatgcattccccaa
gctattttgggtatggatgtaatttgccaagccaaatctggaatggggaaaactgcagta
ttcgttctatcaactttgcaacagattgaacccattgccggtcaagttgctgccctagtt
ctatgtcataccagagaattagcttatcagatctgtcatgaatttgagaggttcagcaca
tatttgcctgatatcaaggttgctgttttttatggtggtgttaacataacaattcacaag
gatcttctaaagaatgaatgccctcacattgttgtcggaactcctggaagaattcttgcc
ttagcaagggaaaagcatctttccttgatgaatgtgaggcattttatacttgatgaatgt
gataagatgcttgattcacttgacatgagaagagatgttcaggagattttcaagatgact
cctcatgacaaacaggtgatgatgttctcagcaactctcagcaaggagattcgtccagtt
tgcaagaagtttatgcaagatccaatggagatttatgttgacgatgaggccaaattgact
cttcatggacttgtacagcactacatcaaattgacagaaatggagaaaaaccggaagctg
aacgacttgcttgatgctttggatttcaatcaagtagttatctttgtcaagagtgtgagt
agagcggccgagctgaacaagttacttgttgagtgtaactttccgtctatctgcatccac
tctgggatgtcccaggaggagagattgacacgttacaagggtttcaaggaggggcataag
aggattcttgtggcaactgatttggttggcaggggcattgatattgaacgggttaacatt
gtcattaactatgacatgcctgattctgctgatacgtaccttcatagagttggtagagct
ggaaggtttggcaccaaaggtcttgccattacatttgtttcatcttcatctgattcaggt
gtactcaaccaggttcaagaaagatttgaagtcgatatcaaagagcttcctgagcagatt
gacacatccacatatatgccgtcctag
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