Ipomoea triloba (trilobed morning glory): 116006887
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Entry
116006887 CDS
T07384
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116006887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116006887
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116006887
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116006887
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
116006887
NCBI-ProteinID:
XP_031103251
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Position
15:complement(3582582..3592412)
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AA seq
833 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPREKAKSETRDWLNNVVSELENQIDNFEAELEGLTVKKGKSKPPRLTHLEASITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSDVDELYSSLPLDKVEA
LEDLVTIGAPVLAKGVSGVVSTKSSIAMTPAQVTVTSPVQQTGSSQEQADEVGSQESASD
AVPRTPPPKSGAVASSAPTTPVGSHASPVAAVTSSSMNALNAVKDEEIAGFPGQKAPPTL
TEAGLRGIDRHGLSSQPAASISLGSISSLSNNGALGAIPSSVPEVTKRNVLGYDERLGST
GMGQPLVSPLANRTIMSQTAKSSDGIGTNDSGNVGESNVMVGRVFSPSVVPGMQWRPGSS
FQNQNEVGQFRGRTEIVPDQREKYLQRFQQVQQNSKQFSAQHQNPLLPQFNSQGSSVTPQ
LGLGVGVQAAALNSVSSSALLQQQPDMGHSKVEELQQQQVLSEDVSADSAPAPSLAKNLM
NEDDMKAYALDAPGGVGSTLAEQSQLPRDTDLSPGQPLQSNQPSGSLGVIGRRSVADLGA
IGDGLSTPPANPGGMHDQTYNLQMLEAAFYKLPQPKDSERAKSYTPRHPAVTPPSYPQVQ
APIVNNPAFWERLGADNYGTDTLFFAFYYQQNTYQQFLAAKELKKQSWRYHRKYNTWFQR
HEEPKVATDDFEQGTYVYFDFHIANDEQHGWCQRIKTDFTFEYNYLEDDLNVN
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgggagccagtcgaaagcttcagggcgaaattgatcgagtgttgaagaaggttcaagag
ggcgtcgatgtattcgacagcatttggaacaaggtttacgacactgataatgccaatcag
aaggagaagtttgaggcggatttgaaaaaggagattaagaagcttcagaggtacagagac
cagattaagacatggattcagtccagcgaaatcaaggataagaaggttagtgcttcttat
gagcaggcactgatggatgctcgtaagcttattgagcgtgaaatggaaagatttaaaata
tgtgagaaagaaacaaagactaaagcattttccaaagaaggcttgggtcaacaaccaaag
acggacccaagggaaaaggctaaatcggagactagggattggttgaacaatgtggttagt
gagcttgaaaaccaaattgataactttgaggctgaactggagggacttactgttaagaaa
gggaaatcaaagcccccgagattgacacatctggaggcatcaattactcggcataaagcg
catataatgaagttagagttgattttaaggttactggataatgatgaattgagtccggag
caagtcaacgatgttaaagatttcctggatgattatgtggaacgcaatcaggaggacttt
gaagagtttagtgatgttgacgagctttatagctctctaccattagataaggtggaggct
ctggaagatctagtcactattggtgcccctgttcttgcgaagggtgttagtggcgtagta
agcacaaaaagttctattgccatgacacctgctcaggtaacggtaacatctcctgtacaa
caaactggttcgtcccaagagcaagcagatgaagtcggttcccaagagagtgcctctgat
gcagttccgaggaccccgcctcctaaaagtggcgcagttgcttcttctgctccaacaaca
cctgttggcagccatgcaagccctgttgctgcagttacttcatcttctatgaatgcgctg
aatgctgtaaaagatgaggagattgcaggcttcccaggccaaaaagcacccccgacactt
actgaagctggattaaggggtatcgatagacatggcctctctagccaacctgcagctagt
atttcacttggttctattagttcactttctaacaatggagctctgggtgctattccttca
tcagttccagaagtgacaaagagaaatgttttaggatatgatgaaagacttgggagtact
ggtatgggacagccactggtttcccctctggctaacagaactatcatgtcacaaactgct
aagtctagtgatggaattggcactaatgatagtggtaatgttggtgagtcgaatgttatg
gttggtagggttttctctccttccgttgtgcctggtatgcagtggaggcctggaagttcc
tttcagaatcagaatgaagtggggcagttccgtggaagaactgaaattgttcctgaccag
agggagaaatatttacaacgatttcagcaagtacaacaaaacagcaaacagttttctgca
cagcatcagaatccactattgccgcagttcaattctcaaggctcctctgtgacacctcaa
cttggattgggagttggagtccaagctgctgcccttaatagtgtttcttcatctgcattg
ttgcaacaacagccagacatgggccactcaaaggttgaagagttgcagcaacaacaggtc
ttatctgaagatgtttctgcagattctgctccagcccccagccttgcgaaaaaccttatg
aatgaggatgatatgaaggcttatgcattagatgcacctggcggagttggcagcactctt
gcagagcaatcccaacttccacgggatactgatctatctccaggccaaccattacaatca
aatcaaccgtcaggaagccttggagttattggtcgaagaagtgtagccgatcttggtgca
attggtgatggcttgagtacaccacctgccaaccctggaggaatgcatgaccagacatac
aacttgcaaatgctcgaggctgctttttacaaacttcctcagccaaaagattcagagcgt
gctaagagctatacaccgagacatcctgctgtgacccctccgagctatccccaagtacag
gcccctattgttaataatcctgcattttgggaacgacttggggctgataactatggcacc
gacaccttattctttgcattttactaccaacagaatacataccaacaattcctggccgca
aaggagctgaagaagcaatcttggagataccacagaaagtataacacttggtttcagcgg
cacgaggagcccaaagttgccacagatgatttcgaacaagggacatacgtttattttgat
ttccatatagccaatgacgaacaacacgggtggtgccagaggatcaagacggacttcaca
tttgagtacaattatcttgaagatgatctcaatgttaattag
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