Ipomoea triloba (trilobed morning glory): 116007236
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Entry
116007236 CDS
T07384
Name
(RefSeq) RNA polymerase sigma factor sigC-like
KO
K03093
RNA polymerase sigma-I factor
Organism
itr
Ipomoea triloba (trilobed morning glory)
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
itr03021
]
116007236
Transcription machinery [BR:
itr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
116007236
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GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
HTH_31
Motif
Other DBs
NCBI-GeneID:
116007236
NCBI-ProteinID:
XP_031103721
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Position
15:24065529..24071250
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AA seq
555 aa
AA seq
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MGFRLHLRWGLSTHPQIFSFRSSSSWPSSTSLKGRETLYDSVGTSPSFMHWENEASHTDP
FRVRTCLSDQQLRENDISVTAEMEIGVGSHSSLYDVIGNNREVLTEEDKLKFLKSSKGKQ
FSLLMKNLDLLENIFADSCVVGLERDILAQLERLGALELFNTFLSRGQKSFPFSDLTNTP
TELVDETQENDLLNIHMNKIVVTSGKKQERELRRRKRSDTNSDVFTLHLQPKTFKLDSKY
PNISSGKTSRNFRNTREKIASSEAEMSKGVKVVAELESIRTILEEETGRVASFSSWAEAA
GLSQKVLQQRLHFGWYCRDELLRSTKSLIVYLARNYRGLGVSFEDLVQAGSFGVLQGAVR
FDHTRGYQFSTYVQYWIKKSMSMLVALHARGIRVPFTIIKVINKIQKAKKALSSRHGKFP
SESEIAKFTGLSTNRIVLASKCLRVVGSIDQKLGYFMSAKFVECTADKSVISPEEAVIRQ
HKINNVYSLLKGLEPKERDILVLRFGLVNNQRKSLEEIGRLHGVSKEWIRRVENRALTKL
RNKNSLQDLRYFLHL
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgggatttaggctgcacctgagatggggtctctcaactcacccccaaattttctctttc
agatcatcatcttcttggccttcttcaacttcattaaagggaagggagactttatatgac
tcagttgggacttctccgtcttttatgcactgggagaacgaagcttcacatactgatcct
ttcagagtgaggacttgtttatctgaccaacagctccgggaaaatgacatctcagtaact
gcagaaatggaaattggcgtaggatctcacagtagcttatacgatgtgatcggaaacaac
agggaggtgttaaccgaggaggacaaattaaaattccttaaatcaagcaaaggaaaacag
tttagtttacttatgaaaaatctcgatcttttggaaaacatttttgccgattcatgtgtg
gttgggcttgaaagagatattctggcacaacttgagaggctcggagctctggaattattc
aatacttttctctcgagggggcaaaaatcgtttcccttttctgatttgacaaacacgcca
actgagcttgttgacgaaactcaggagaacgacctcctgaatattcacatgaataagatc
gttgttacctcggggaaaaagcaggaaagagagttgagaagaaggaaacggtccgatact
aatagtgatgtttttacactacatctgcagccaaaaacattcaaattggactcaaaatac
ccaaatatttcttctggaaaaacatcacgaaattttagaaatactagagagaaaattgct
agcagtgaagcagaaatgtcaaagggtgttaaggtggttgcagaactcgaaagtatcagg
acaattctggaagaagaaaccggcagagtagctagttttagtagctgggcagaagctgct
ggactgagccaaaaggtattgcagcagcgtttgcattttggctggtattgcagagatgaa
cttcttagaagtacaaagtcgttaatcgtatatcttgctagaaactacagaggactcgga
gtctcatttgaagatctagttcaggctggcagtttcggtgtcctacaaggtgcagtgaga
tttgaccacaccagggggtaccaattctcaacatatgtccagtattggataaagaaatca
atgtccatgttggtagcactccatgctagagggattcgcgttcctttcacaataattaaa
gtcatcaataaaattcaaaaagctaaaaaggctctgagtagtcgccatggtaagtttccg
agtgagagtgaaattgccaagttcaccggtctatctaccaacagaattgtgttagctagc
aaatgtctgagagttgtggggtcgatcgatcagaaactgggatattttatgagtgccaaa
tttgtggagtgtacagcggacaaatctgtgatcagtccagaagaagctgttataaggcag
cacaagattaacaacgtttattctcttctaaaaggcctggagcccaaggagagggatata
ttagtccttagatttggtctcgtaaacaaccagcgcaagtcactagaggagatcggaagg
cttcacggcgtaagcaaagaatggatcagaagagtcgagaaccgagccctcacgaaactt
agaaacaaaaactctcttcaagatttaaggtattttttacatttgtag
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