Ipomoea triloba (trilobed morning glory): 116007277
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Entry
116007277 CDS
T07384
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03013
Nucleocytoplasmic transport
itr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116007277
03015 mRNA surveillance pathway
116007277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116007277
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116007277
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116007277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
116007277
NCBI-ProteinID:
XP_031103771
LinkDB
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Position
15:complement(412720..415721)
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AA seq
497 aa
AA seq
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MADDSTSVAASAMEEEMKPQLSKSWADVADETEEAEASSTSDVKLNSELKMDSLAMDESK
SVYKTLSDPDDASIEAVTSGDTLYKSAKRFEDLNLTPELLKGLYVEMKFERPSKIQEISL
PMILTPPNKNLIAQAHNGSGKTTCFVLGMLSRVDPKLAAPQALCICPTRELAIQNMEVLL
KMGKYTGITSELAIPADAANYIPINKRPPVTAQVIIGTPGTINKWVIAKKLGTSCMKILV
FDEADHMLAESGFQDDSIKIMKAIVRGKADCQVLLFSATFNETVKGFVTKIVKDLFVKDY
NQLFVKKEELSLESVKQYKVQCPDELSKVMVIKDKILELAQKVGQTIIFVRTRNSAHMLH
KSLVDYGYEVTTIQGALKQEDRDKIIKEFKEGLTQVLISTDLLARGFDQSQVNLVVNYDL
PVQYGHWSDPDYEVYLHRIGRAGRFGRKGAVFNLLCNDTDTMLMSKIENHFNSPVAEVTS
WQSDTEFEAALKTAGLL
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgacagtacttccgtcgccgcctcggcgatggaggaggagatgaaacctcag
ctgagtaagagttgggccgacgtagcagacgagacggaggaagcggaggcatcatccacc
tccgatgtgaaactcaactccgaacttaaaatggactctctagccatggatgagtccaaa
agtgtatacaaaaccctctctgaccccgacgacgccagtatcgaagctgttacatctggg
gatactttgtataaatctgccaaaaggttcgaggacttgaacttgactccggagttgctg
aagggattatatgtagagatgaagtttgagaggccgagtaaaattcaggaaatcagtctg
cctatgatactcactccgccgaataagaatctgattgctcaggctcacaatggatccggt
aagacgacgtgctttgtgcttggaatgttgagccgagttgatccgaagctcgctgcccct
caggctctctgtatttgtcccactagagaactcgccattcagaatatggaagttctgttg
aagatggggaagtatactggtataacatcagaattggcaataccagcagatgctgccaac
tatattccaataaataaacgacctcctgttacagctcaagttataattggtacccctgga
accataaataagtgggtcatagcaaagaagctgggcacaagttgtatgaagattcttgtg
tttgatgaggcagaccacatgttagcagagagtggctttcaggatgactccataaaaata
atgaaggctattgtcagaggcaaagctgattgccaggtgctcctgttttctgcaaccttc
aatgaaactgtcaagggttttgtgacgaaaattgttaaagacctctttgtaaaagattac
aatcagctctttgtaaagaaggaagaactttcactggagtctgtgaagcagtataaggtg
caatgccctgatgaactttcaaaagtcatggtgattaaggacaaaatacttgaattggca
caaaaagtagggcagacaattatctttgttcgtaccagaaacagtgctcatatgttgcat
aaatctcttgttgactatggctatgaggtaacaacaattcaaggtgctttgaagcaagaa
gacagagataaaattatcaaggagttcaaggaaggtcttacacaagttcttatatcaacg
gatcttcttgctcggggatttgaccaatcacaggtcaatttggttgtgaattatgatctt
ccggtgcaatatggccattggtcagatccagattatgaggtatacttgcatcggattggc
agagcaggacgttttggccgcaaaggtgctgtgttcaacctgctttgcaacgatacagac
accatgctgatgtcgaaaattgagaaccacttcaatagtcccgtggccgaggtgacatct
tggcaaagtgatacagaatttgaggctgctttgaagactgcggggctactctaa
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