Ipomoea triloba (trilobed morning glory): 116007367
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Entry
116007367 CDS
T07384
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116007367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
itr03041
]
116007367
Spliceosome [BR:
itr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
116007367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_DCAF4
NBCH_WD40
PRP4
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_SCAP
WD40_RFWD3
WD_LRWD1
eIF2A
Beta-prop_WDR75_2nd
Beta-prop_SPT8
WD40_like
Motif
Other DBs
NCBI-GeneID:
116007367
NCBI-ProteinID:
XP_031103890
LinkDB
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Position
15:2637173..2641628
Genome browser
AA seq
569 aa
AA seq
DB search
MDVDEENSVEPTETSSVITDNQNVASALGAISLQPVQPLAPPVIIPPIAPAIAPRPVVAP
PLAPLPVRPSVLKPPSVTQNGDMRASDSDSDHDESGSGAMAGSTQEYEISEESKLVRERQ
EKAMQELLLKRRAAALAVPTNDMAVRARLRRLGEPITFFGEREMERRDRLRALMARLDAE
GQLERLMKAHEDEEASASAAPTEEEEIIYPFYTEGSKSLLQARIEIAKYSILKSALRLDR
ARRKRDDPDEDLDAEIDLALNQAGSLVLDCSEIGDDRPLSGCSLSHDGEMLATCALNGVA
KLWSMPQVQKVSTLKGHTERATDVVFSPTSNHLATASADRTARLWNAEGSLLRTFEGHLD
RLARIAFHPCGKYLGTTSFDKTWRLWDVETGEELLLQEGHSRSVYGLSFHHDGSLAASCG
LDALARVWDLRTGRSILAFEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYT
IPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSSRDFKPVRTLSGHEAKVTSLDVGADG
QLVATVSHDRTIKLWSSKSSEKEKAMDID
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggatgtggatgaggaaaattctgtggaacctacagagacttcttctgttattactgat
aatcagaatgtagcttctgccctgggtgcaatttcacttcaaccagttcaaccacttgca
ccacctgtaatcatacctcctattgcacctgccattgctccaagacctgtagttgctccg
cctctggcacctctccctgttcgaccatcagttcttaagcctccttcagtgacacagaat
ggagacatgcgggctagtgattcagattctgaccatgatgaatcaggatcaggtgcaatg
gctggctctactcaagaatatgagatttctgaagagagcaaactggtgagagagagacaa
gaaaaagccatgcaggagcttcttttgaagcgaagagctgctgctctggcagtccctaca
aatgacatggctgttcgagctcgtcttcgtagacttggtgaacccataaccttttttgga
gaaagggaaatggaaagacgggatcgactgcgagcacttatggcgagacttgatgcagaa
gggcagctggaaagactgatgaaagctcatgaggatgaagaagcttcagcttctgctgca
cccactgaggaggaggagattatatacccattttatactgaggggtcaaaatctctttta
caggcccgaatagaaattgcaaagtactctattctgaagtcagccttgcgtcttgatcgt
gctaggagaaaaagggatgatcctgatgaagatttggatgctgaaatagatttggcttta
aaccaggcaggaagcctggtccttgattgcagtgaaattggagatgatcgaccactttct
ggttgctcactatcacatgatggtgagatgcttgccacctgtgctctgaatggagttgca
aaattgtggagcatgcctcaagtacagaaggtttctacccttaaggggcacaccgaacga
gctactgatgtcgtattctctcccacatccaatcatctagcaaccgcatctgctgatcga
actgcaaggttgtggaatgcagaagggtctcttttgaggacatttgagggccatttggat
cgtctagcccggattgccttccatccatgtggaaagtacttgggcacaactagctttgac
aagacttggagattatgggatgtagaaactggtgaggaattgcttcttcaagaaggtcac
agtaggagtgtatatggactatcttttcaccatgatggttccttagctgcatcttgcgga
ctagatgctcttgctcgtgtttgggatcttaggacaggaagaagcattcttgctttcgaa
ggccatgttaaacctgttctaggtatcagtttttctcctaatgggtatcatttagctact
ggtggtgaagataatacttgccgaatttgggacctaaggaagagaaaatccctttacaca
atacctgctcactctaatctcatctctcaagttaagtttgaaccccaggaaggatacttt
ttggtgactgcttcatatgatatgacggctaaggtgtggtcatcaagagattttaagcca
gtgaggacactatctgggcatgaagccaaagttacatcattggatgttggggcagatgga
caacttgttgctacagtttcacacgatcgaactataaagctatggtctagcaaaagcagt
gaaaaggaaaaagcaatggatattgactag
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