KEGG   Ipomoea triloba (trilobed morning glory): 116007562
Entry
116007562         CDS       T07384                                 
Name
(RefSeq) splicing factor 3B subunit 1
  KO
K12828  splicing factor 3B subunit 1
Organism
itr  Ipomoea triloba (trilobed morning glory)
Pathway
itr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:itr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    116007562
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:itr03041]
    116007562
   03036 Chromosome and associated proteins [BR:itr03036]
    116007562
Spliceosome [BR:itr03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    116007562
 Complex B
    116007562
 Complex C
   U2 SnRNP specific factors
    116007562
Chromosome and associated proteins [BR:itr03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    116007562
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_ECM29 HEAT_2 HEAT_EF3_N Htt_N-HEAT_1 Cnd1 XMAP215_CLASP_TOG Vac14_Fab1_bd ParcG Adaptin_N
Other DBs
NCBI-GeneID: 116007562
NCBI-ProteinID: XP_031104139
LinkDB
Position
15:complement(3318544..3323150)
AA seq 1263 aa
MDDEIQKTQEERKKMEQQIASLSAVTFDTDLYSADRFEGYEKSIPVNDEEDAFENAENEI
ARKMASFTAPKQFFKEAPRGGDDDENLGFNKPSKIIDREDDYRRRRLNRVISPERNDPFL
DKTPGPDVRTYADVMREEALKRQKEDLMKEIAKKKKEEEARAAEKEKEAEKQPAQKRRNR
WDQSQDENSAKEKKAKTSSDWDLPDSTPGIGRWDATPTPGRVGDATPSVRRNRWDETPTP
GRLADSDATPSAGGVTPGATPAGMTWDATPKNLGLATPTPKRQRSRWDETPATMGSATPM
AGATPAAAYTPGVTPVGGSELATPTPGAINLRGPLTPEQYNLMRWEKDIEERNRPLTDEE
LDAMFPQEGYKILEPPASYVPIRTPARKLLATPTPIGTPLYNIPEENRGQQFDVPKEMPG
GLPLMKPEDYQYFGALLNEENEEELSPEEQKERKIMKLLLKVKNGTPPQRKTALRQLTDK
AREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLL
IDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIP
ALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVR
TITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDAIYA
SYYTKEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEAEYIRNDILPEFFRNFWVRR
MALDRRNYKQLVETTVEIANKVGVADIVGRVVEDLKDESEPYRRMVMETIEKVVANLGAS
DIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRVKPYLPQICGTIKWRLN
NKSAKVRQQAADLISRIAVVMKQCGEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIV
NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFE
LLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAE
TCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRD
LVHRQTAASAVKHMALGVAGLGCEDALVHLMNYVWPNIFETSPHVINAVMEAIEGMRVAL
GAAVILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPILEDDSNNTYSRPELS
MFV
NT seq 3792 nt   +upstreamnt  +downstreamnt
atggatgatgagatacagaagacacaggaggagaggaagaagatggagcagcagattgct
tctctttctgctgtgacttttgatactgatctatacagcgctgaccggtttgagggttat
gaaaagtctatacccgtgaatgatgaggaagatgcttttgagaatgccgagaatgagatt
gctaggaagatggcatcattcactgccccaaaacaattcttcaaggaggctccgaggggt
ggagatgatgatgaaaacctggggtttaataaaccaagtaagattattgatagggaggat
gattatcggaggaggaggttgaaccgcgttatttctcctgagaggaatgacccttttttg
gataagacccctggtccagatgtgaggacatatgcggatgtgatgagggaggaagctctt
aagagacaaaaggaagatttgatgaaagaaattgcaaagaagaaaaaggaagaagaggca
agggctgcagagaaagaaaaggaagctgaaaagcagcctgcccagaagaggaggaatagg
tgggatcagtctcaagatgagaatagtgcgaaagagaagaaggccaaaacaagttctgac
tgggatcttccagactcaactcctgggattggaaggtgggatgcaactcccacgccgggg
agggttggtgatgctaccccttcagttaggagaaataggtgggatgaaacccccactcct
gggcggctggctgattcagatgctaccccatctgccggtggtgttactcctggtgcaacc
cctgctggaatgacatgggatgctacaccaaaaaatttgggtcttgctactcctacaccc
aaaaggcagagatcaaggtgggatgagactccagcaactatgggaagtgcaacaccaatg
gcaggtgctaccccagctgcagcttatacaccaggtgtaactcctgttggtggaagtgaa
cttgctactcctacccctggtgccattaatcttcgtggcccacttacaccagagcaatat
aacctaatgaggtgggagaaggacattgaagaaagaaatcgccctttgactgatgaagag
cttgacgcaatgtttcctcaagaaggttataagatattggaacctccagcttcctatgtt
cctatcagaacacctgctagaaagcttcttgccaccccaacgccgattgggactcctctt
tataacattcctgaggaaaataggggtcaacagtttgatgtaccgaaagaaatgccaggt
ggcttgccacttatgaaacctgaggattaccaatactttggtgccttactgaatgaggaa
aatgaagaggagttgtctcctgaagagcagaaggaacgtaagattatgaaacttctgctc
aaggttaagaatgggacaccccctcagaggaaaacagctttgagacagctgactgataag
gccagagagtttggtgctggtccactcttcaatcgcattctgccattgctcatgcaacca
accttggaagaccaagagaggcacttacttgtgaaggttattgatagggtactttacaag
ttggatgagttggttcgtccatatgtacacaagattcttgtggtgattgagcctctactg
attgatgaagattactatgctcgtgttgaaggaagggagattatctctaaccttagcaag
gcagctggtttggcaactatgattgcggccatgcgtccagatattgataacattgatgaa
tatgtcaggaataccactgctagagcgtttagtgttgttgcctctgcacttggtattccc
gccttgctaccatttctgaaagcagtctgtcagagtaagaaatcttggcaggctcgtcac
accggtattaagattgttcaacagattgctattctaattggctgtgctgttcttccacac
ttgagatctttggtagaaattatagaacatggattaaatgatgagaaccagaaggtccga
accattacagctctttctctggctgcacttgctgaggctgctgcaccatatggtattgag
agttttgattcagttttgaagcccttgtggaagggtattagatcgcatcgtggaaaggtt
ttggctgcattcttgaaggcgattggttttatcattcctcttatggatgccatctatgcc
agctactataccaaggaggttatggttattctgattcgtgaatttcaatctcctgatgag
gagatgaagaaaattgtgctgaaagtggtgaaacaatgtgtaagtacagaaggtgtggag
gctgaatatatcagaaatgacattcttccagagttcttccgtaatttctgggttaggaga
atggctttggatcgccgaaactacaagcagcttgttgaaacaactgtagaaattgcaaac
aaggtgggtgttgcagatatagtagggagagtcgtggaagacctaaaagatgaaagtgaa
ccatatagaagaatggtcatggagacaattgagaaggtggttgcaaatcttggtgcatct
gatattgatgctcgtttagaagagcttctgattgatggcattctttatgctttccaagaa
cagaccagtgatgatgccaatgtaatgctcaatggatttggtgctgttgtgaatgccctt
ggacagagggtgaagccctacctcccccagatctgtggtacaataaagtggcgtctgaac
aataagagtgctaaagtgagacagcaagctgcagatttgatttccaggattgcagtggtc
atgaaacagtgtggagaagaacagttaatgggccatcttggtgttgtgttgtacgagtac
ttgggagaagaatatcccgaggttctggggtcaattctgggtgctctcaaggcaattgtg
aatgttattggtatgactaagatgactcctcccattaaggatttgcttcctcggttgacc
cctattttgaagaatcgtcatgagaaggtccaggagaactgtattgatctggttggacgt
attgctgaccgtggggctgagtttgtacctgcaagagaatggatgagaatctgttttgaa
cttctcgagatgcttaaagcccataagaagggtattcgacgagcaacagtcaacacattt
ggctatattgctaaagctattgggccccaggatgtccttgcaaccttgttgaacaatctc
aaggtgcaggaacgtcaaaaccgtgtctgcacaacagtggcaattgcaattgttgcagaa
acctgctctccgttcactgtcctccctgcattgatgaatgaatatcgggtcccagagctt
aatgttcagaacggtgtcctgaaatccctctcctttcttttcgagtacattggcgaaatg
gggaaggactacatatacgccgtaactcccttgctcgaagatgctctaatggaccgagat
ctggtacacaggcaaactgccgcctctgctgtaaagcacatggccctaggggtcgctggc
ctcggatgcgaagatgcactggtccaccttatgaactacgtctggccaaacattttcgaa
acttccccccacgtcatcaacgctgtcatggaagccatcgaaggtatgcgagtcgcactt
ggggctgctgtcatcctcaattactgtctccagggactgttccatcctgcccgcaaagtc
cgagaagtttactggaagatctacaattcactatacattggcgctcaggatgcgctcgtg
gccgcttaccccatcctcgaggacgactcgaacaatacatacagcaggcctgaattatcg
atgttcgtatga

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