Ipomoea triloba (trilobed morning glory): 116009729
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Entry
116009729 CDS
T07384
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116009729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116009729
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116009729
mRNA degradation factors
5'-3' decay
Decapping complex
116009729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_EML_2
RE_TdeIII
Motif
Other DBs
NCBI-GeneID:
116009729
NCBI-ProteinID:
XP_031104712
LinkDB
All DBs
Position
2:complement(10681192..10689517)
Genome browser
AA seq
1395 aa
AA seq
DB search
MASPGNLNQPGGGPFDVPKFFKTSAPSQPPPVAAVAAANPTPQNPNFISSSPFPPPSTAS
YPPTSGMEYIYSFPPQTSAPFPHHPQFHHQHIPPYPAPLPPQAQGLQRSVSFPTPPLQPP
PPATPHQFQNPNSTSPNPGARLMALLSAPPSSHETPQQIMPVPPIHSAVSGSDPPEFSLP
HGAPGSNLPLRMPSSKLPIGRHLSGEHIGYDINARLPGEVQPQLEVTPITKYASDPGLVL
GRQIAVNKTYICYGLKLGNVRVLNINTALRSLLKGLGQRVTDMAFFAEDVHLLASASVDG
RVYIWKITEGPDEEDKQQITGRMVTAIQVVGGESFHPRVCWHCHKQEILVVGVGKRILRI
DTTKVGKGEVFSAEEPLRCPFDRLVEGVQLVGTHDGEITDLSMCQWMTTRLVSASVDGMI
KIWEDRKPMPLAVLRPYDGQPVNSVSFLVAPERPDHIILITGGPLNRELKVWVSTSEEGW
LLPSDAESWHCTQTLELKNSGEARVEESFFNQVMALSQAGLFLLANAKKNAIYAVHLEYG
PNPASTRMDYIAEFTVTMPILSFTGTSDLLPHGEQVIQVYCVQTQAIQQYALDLSQCLPP
PLETAMLEKSESSASREVISIEGFAQNEHSGNKPTELPISSSAPKIPVHDGGSESVPTVR
NPVGSASIEIATSQEFSSSMENKLATSSIVNANADILPVASPPLPLSPRLSQKLSSFRSP
SNSSEPGPLNHRGGDPIVEYSVDRQMDAIHANLSDAASLDDDENKVSHEEVSSGLNNPIK
FKHPTHLVTPSEILMATNQQKNDGEKNIQDVVINNEARNMEVEVKVVGESISSQNNDTRE
ELHVSVSNKKEKSFCSQASDLGMEMARECHDVSPETYIVEDSKQIDGANGSEELAQPSND
QEEDCNSTKDVSRKELNSTNPVPVQQPPTPTTKGKKQKGKSSQGSCPPSLSPGVVNPTDS
HNEAGVISSVPSMVAASTQISSMHEMLNQLISMQKETQKQMGMLVAVPVTKEGKRLETVL
GRQMEKVAKANADALWARLQEESARQEKLLRERNQQITNLILNSLNKDLPVLVEKLVKKE
LGAIGQTVARSIEKTVSVSISETLQKGVGDKAVSQLEKSVNSKLEVTVARQIQAQFQTSG
KQALQENLKSILEASLVPAFEMSCKAMFEQVDATFQKGMAEHAAAAQQQFESMHSPLAHA
LRDAINSASSVTQTLSGELADGQRKLLALANSKAANPTVSPLNNGPLLQEKFEAPVDPTK
ELSRLLVERKYEEAFTAALQISDVNIVSWLCSQVDLPGILSMNPLPLSQGVLLSLLQQLA
CDISKESTRKLSWMRDVVSPINPSDPMIAVHVRPIFEQVYQILNHHRNLPTTSGADQSSI
RLIMHVINSMLMTPK
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccctggaaatcttaatcaaccaggtggaggaccattcgacgtgcccaaattc
ttcaagacatcggcgccgtcacagccaccgcctgtggcggcggtagcagccgcaaaccct
actccccaaaaccctaacttcatttcctcctcgccttttcctccgccgtctactgcttcc
tatcctccgacctccgggatggaatatatttactcttttccgcctcagacctccgctcca
ttcccacaccacccccaattccaccaccagcacatccctccctaccccgccccgcttcct
cctcaagcgcaagggcttcagagatccgtgtctttccccaccccgcctcttcagcctccg
ccgccggcgactcctcaccagttccagaaccctaattctactagccccaatcccggggct
cgcctcatggctctgttgagtgcgccgccttcctctcacgaaactccgcaacagataatg
ccagtgccgcccattcattcggcagtttccgggtcggacccgcccgaattttcattgccc
catggtgctcccgggtccaatctaccattgcggatgcccagcagtaagctgcctataggc
cggcatttgagtggcgaacacattggttatgacattaatgctagattgcctggtgaggtg
cagcctcaactcgaggttactcccattacaaagtatgcttcagatcctggacttgttttg
ggccggcaaattgcagtcaataagacttacatatgttacggattgaagttgggcaacgtt
cgggtccttaacatcaatactgctctcagatcattgctaaagggcctagggcagagggtc
acggacatggctttctttgcagaggatgttcatcttttggctagtgcaagtgttgacggc
cgggtatatatatggaaaatcactgagggaccggatgaggaagacaagcagcaaataact
ggcaggatggttactgctattcaagttgtgggaggagaatcttttcatccacgagtttgt
tggcattgtcataaacaagaaattcttgtggttggggttggaaagagaattttgagaatt
gatacaaccaaagttggaaaaggcgaagtattttcggccgaagaaccactgagatgccca
tttgatcggttggttgaaggggttcagcttgttggtactcatgatggagaaattactgac
ttatcaatgtgccaatggatgaccactcgtctcgtgtctgcttcagtggatggcatgatc
aagatttgggaggaccgcaagcccatgccacttgcagtactaaggccatatgatggtcaa
ccagttaattcggtttcatttttggttgctccagagcgcccagaccacatcatacttatt
actgggggcccactgaatagagaactgaaggtatgggtatctacaagtgaagaaggatgg
ttgcttcctagtgatgctgaatcatggcactgtacacagacattggagttgaagaattca
ggtgaagctcgagttgaagaatcattttttaatcaagtcatggccttgtctcaagcaggt
ctatttttattggcaaatgcaaaaaagaatgccatatatgcagtgcacctagaatatggc
cctaatccagcatcaacacggatggattacatagcagaattcacagttactatgccaata
ttgagttttactgggacaagtgatttactaccgcatggggaacaggttattcaggtgtat
tgtgtgcaaacacaggctattcagcagtatgctttggacctatcccagtgtttgccacct
ccactggagactgccatgttagagaagtcagaatctagtgcttcacgcgaggttattagt
attgaaggatttgctcaaaatgagcactctggaaataaaccaacggaattacctatatct
agttctgcacccaaaattcctgtgcatgatggtggttctgagagtgtgcctacagtgagg
aatcctgttggttctgcttctattgagatagctacatcacaggagttcagttctagcatg
gaaaacaaactggctactagctccattgtaaatgccaatgctgatattcttcccgttgca
tcacctcctcttcctttgagtcctagattgtctcagaagctttctagttttagaagccca
tcaaacagctctgaacctggtcctcttaatcatcgcggtggagatccaattgttgaatat
tcagttgacagacaaatggatgccattcatgcaaacttgtctgatgcagcttctctggat
gatgatgaaaacaaggtttctcatgaggaggtttcctcaggtctcaataatcctatcaaa
ttcaaacatcccactcatctggttactccttcagagattttgatggctacaaatcagcag
aagaatgatggagaaaagaacatacaagatgttgtaatcaacaatgaagcacgtaacatg
gaggttgaagttaaggttgtgggtgaatcaatatctagtcagaataatgacactcgagaa
gaacttcacgttagtgtctcaaataagaaggagaaatccttttgctctcaagcctctgat
cttggaatggagatggctcgagagtgccatgatgtttcacctgaaacctatattgttgaa
gattctaagcaaattgatggtgctaatggaagtgaagaactggcccaaccatcaaatgat
caagaggaagattgcaattctaccaaagatgtctccagaaaggagttaaactcaactaac
ccagttcctgttcaacagccacctacacctactacgaaggggaaaaagcagaaggggaaa
agttctcaaggatcttgtccgccatcattatcacctggtgttgtcaatccaactgattct
cacaatgaagcaggtgtcatctcaagtgtcccctcgatggttgctgcatctacacaaatt
tcatccatgcatgagatgctgaatcagctcatctccatgcaaaaagaaacacaaaagcag
atggggatgttggttgctgttccagttaccaaagagggaaaaaggcttgagacagtcttg
ggacgccagatggagaaagttgctaaggccaatgctgatgctttatgggctcgccttcaa
gaagaaagtgcgaggcaggaaaaattattgcgtgagcgcaatcaacagataacaaatttg
atcttaaacagcctaaacaaggaccttccagtgttggtggaaaaacttgtgaagaaagag
ttaggtgccattgggcaaactgttgcacggagtattgagaaaacagtatcagtgtctatt
tcagaaactttgcagaaaggagttggtgacaaggctgtgagccagctagagaaatcagtt
aattccaaacttgaagttactgttgcaagacaaatccaagcacagtttcagacttctgga
aaacaagctctccaggagaatctgaaatctattcttgaagcctcgcttgtccctgctttt
gaaatgtcatgcaaggcaatgtttgagcaagtggatgctacatttcaaaagggaatggct
gaacatgctgctgctgctcagcaacagtttgagtcaatgcattcaccactggctcatgct
ttacgggatgccatcaattcggcatcatcagtgacacaaaccctaagtggtgagctggct
gatggtcaaagaaagttgcttgctctagcaaattctaaagcagcaaatccaactgtcagc
ccattgaataatgggcccttgctccaagagaagtttgaagcacccgtggatccaaccaaa
gagttatctagattgttggtggagaggaaatatgaggaggccttcactgcagccttgcag
attagtgatgtgaacattgtatcctggctatgctctcaggttgatttgcctgggatctta
tcaatgaaccctctcccattgagtcaaggagtactcctctcattacttcaacagttagct
tgcgacattagcaaagagtcaacccggaaactgtcatggatgagagacgttgtatccccc
ataaacccaagcgatccgatgattgcagtgcacgtccgtcctatcttcgagcaagtgtat
cagatactaaaccatcatcggaatcttcccaccacgagcggtgccgaccagtccagcatc
cgcctgatcatgcatgttatcaactcaatgttaatgacccctaaatga
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