Ipomoea triloba (trilobed morning glory): 116009851
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Entry
116009851 CDS
T07384
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116009851
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116009851
03012 Translation factors [BR:
itr03012
]
116009851
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116009851
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116009851
Translation factors [BR:
itr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
116009851
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
R3H
HA2_C
Ank_2
ATPase
AAA_19
nSTAND3
HA2_N
ResIII
Ank_5
AAA_22
ABC_tran
NPHP3_N
PhoH
AAA_7
Sigma54_activat
AAA_23
Motif
Other DBs
NCBI-GeneID:
116009851
NCBI-ProteinID:
XP_031104868
LinkDB
All DBs
Position
2:complement(3325263..3336549)
Genome browser
AA seq
1243 aa
AA seq
DB search
METTTAAGGSGKGGKGGKGRKKSNKSNKKANNGGWPKGVDEATRIRISEILQRFRSSNEE
VYKFESNLNNFERAAVHMLCRKMGMRSKSYGHGKQRQVSVFNKGKKIDSQRGKETLTCLK
FSEGAQAILKDLFSRYPPGVEETTSYMSEKHNKKANKLYGLRDDIFRKPAMDKSDIAKEV
ELLASRVENNQDLRQIFERRSKLPIASFKDTITSSIESNQVVLISGETGCGKTTQVPQYI
LDHMWAKGEACKIVCTQPRRISATSVSDRISTERGEHLGDTVGYKIRMESSGGRHSSIVF
CTNGVLLRILVNTSKLNKKALQGEKDDVSEITHIIVDEIHERDRFSDFMLAIIRDMLPLY
PHLRLILMSATMDEERFSKYFGGCPIIRVPGFTYPVKTFYLEDVLGFVKSVENNHPDNTT
ASLNSEDSILTEEYRVALDEAINLAVSDDEIDTLLDIISSEGVPEAINYQHSLTGVTPLM
VFAGKGSINDICTLLSLGADCHLKAKNGTTALDWALQENQTEAAEIIKKHIEKSFSNSEE
QQLLLDKYLSTVHAELIDDVLIEQLVRKICMNSKDGAILVFLPGWDVINRTRDRLHKSAY
FKDTSKFSIIPLHSMVPSVEQKKAFKRPPRDCRKIILSTNIAETAVTIDDVVFVIDSGRV
KEKSYDPYNNVSTLQSSWISKASAKQREGRAGRCQPGICYHLYSKLRAVSLPEFQVPEIK
RMPIEELCLQIKLLDPDCNVEEFLQKTLDPPVYETIRNAIIVLQDIGALTIEEKLTQLGQ
RIGSLPVHPLTSKMLLIAILLNCLDPALTLACASEYKDPFTLPMLPNERKKADAAKAELA
SLYGGRSDQLAVVAAFECWRGAKQKREESRFCSQYYVSSGTMKMISRMRKQLQSELVRNG
FIRGNMSEYNLNAQDPGILHAVLVAGLYPMVGRMLPTPKSGRRNVIETAGGDKVRLHPCS
TNFKLSVKKLEQPIILYDEITRGDSGLHIRRCSIIGPLLLLLLATEIVVAPANHKNDVGD
DSESDYESGCEDDSEEEKRKSDLSNGENAMSSPDNRVKVVVDRWLPFFLTALDVAQIYCL
RERLSAAILYRVTYPSRELPETLCASMYAFACILSYDWMNGISLPCESIDSLTTMVGSAE
ISESPSGKKNVEADKNYLKSLLCHDSLSGNHNMPTSRGASSSQSSAPQHLLSGPGSARPH
KMPTSLDASSSQSSAHRYFLRPRISKAGHSKRQHGNGSSQVDS
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atggagacgacgactgcggcaggaggctctgggaaaggaggaaaaggagggaaaggacgg
aagaagagcaacaagagcaacaagaaggcaaataatggaggttggcccaagggcgttgat
gaagccactcgaattcggatttcagaaattctccaacgctttcgatcttccaatgaagaa
gtgtacaaatttgaatcaaatcttaacaattttgagcgagcagcagtgcatatgctgtgt
aggaaaatgggcatgcgctccaaaagttatgggcatgggaagcaacgtcaggtatctgtt
ttcaacaagggaaagaaaatagactcacagagagggaaggagactctcacttgtcttaag
ttttcagaaggtgcacaagccattctaaaggatctatttagtcgatatccacctggtgtc
gaggagacaacttcttatatgtctgaaaaacataataaaaaagccaacaagttatatgga
ttaagggatgatatcttccgcaaacctgcaatggacaagtcagatattgcaaaggaagtg
gaactacttgcttctagagtggaaaataaccaagacctgagacagatttttgaacggagg
tccaaacttccaattgcttctttcaaggataccattacatcaagcatagaatctaatcag
gtagtgctaatctctggtgaaactggatgtggaaaaactacacaggtgccacaatatatt
ttagatcacatgtgggctaagggtgaggcgtgcaaaattgtgtgtactcagccacgacgt
atttctgcaacttctgtttctgatagaatttctactgaaagaggtgaacatcttggtgat
actgttggctataagattcggatggaaagcagcggaggaagacactcgtctattgtattt
tgtactaatggggttttactgaggattctggtcaacactagcaagttgaacaaaaaagct
ttgcaaggggagaaggatgatgtgtctgaaattacccacatcattgtggatgaaattcat
gaaagggatcgcttctccgatttcatgctagcaattatcagggacatgcttcctttgtat
cctcatttgcgcctgattctaatgagtgccacaatggatgaggaacgtttttcaaagtat
tttggcggctgcccaataatcagagtccctggattcacttacccagtaaaaactttctac
ctagaagatgtacttggttttgttaaatcagtggaaaataatcaccctgacaatacaaca
gctagtctcaactcagaagactccatattaacagaggaatatagagttgccttagatgaa
gctattaatctggctgtatctgatgatgagattgataccctcttagatataatatcttct
gaaggggtacctgaagccattaattaccaacattctttgacaggagtgacaccgttgatg
gtttttgctggaaaaggtagtatcaatgatatttgcacactcctttctctgggtgctgac
tgccacttaaaagccaagaatgggacaactgctctagattgggcattacaagagaaccag
acagaagcagctgaaattattaaaaaacacattgagaaatcattttccaattctgaggag
cagcaacttttacttgataaatatctatcaacagttcatgctgaattgattgatgatgtt
ctcattgaacagctagtaagaaaaatatgtatgaactcaaaggatggagccatcctagtt
ttccttcctgggtgggatgttattaataggacaagagatagattgcataagagtgcatat
ttcaaagatacatccaagttttcaataattcctctccattctatggttccatcagtggag
caaaagaaggcttttaaacgtcctccccgagattgtcgcaaaatcattctttcaactaat
attgctgagactgctgttaccattgatgatgtagtttttgtaatagatagtggacgtgta
aaagaaaaaagttatgatccttataacaatgtatcaactcttcaatcctcttggatttca
aaagctagtgccaagcaacgtgaaggacgcgcagggcgctgccagccaggaatctgttat
catctttattcaaaacttagagcagtttcactgccagagttccaagttcctgaaattaag
aggatgcccattgaggagctatgtttgcagattaagcttcttgacccagattgtaatgtt
gaggagttccttcagaagacattagatcctcctgtttatgagacaataagaaatgcaatt
attgttctgcaagatattggtgccttaactattgaagagaaacttacacaacttgggcag
aggataggatctttacctgttcatcctcttacaagcaagatgcttttgattgctatatta
ttgaattgtcttgaccctgcattgacattggcctgtgcatctgagtataaagatccattt
actcttccaatgttaccaaatgaaaggaaaaaagctgatgctgcaaaagcagagctagcc
tcattatacggtgggcgtagtgatcaattggctgtggtggctgcatttgagtgctggaga
ggtgccaaacaaaaacgtgaggaatcgaggttctgttctcagtattatgtatcatctggt
accatgaaaatgatatcaagaatgcgcaagcagctgcagtccgaattggttcgaaatggg
tttatacgaggaaacatgtctgagtataatctaaatgctcaagatccaggaattctacat
gctgtccttgttgctggtttgtatcctatggtagggagaatgcttccaactcccaaaagt
ggaaggagaaatgttatagaaactgcaggtggtgataaagttcgtttgcatccttgctct
accaacttcaagctgtcagtcaaaaaacttgaacaacctataattctatatgatgagata
actcgtggagatagtggtttgcacataagacgttgtagtataattgggccactcctgctg
ctattgcttgcaactgagattgtagtggctcctgcgaatcataaaaatgatgttggtgat
gacagtgaaagtgactatgaaagtggctgcgaagatgacagtgaggaagagaagagaaaa
tcagacctgtccaatggagagaacgctatgtcgtctcctgataatagagtgaaggtcgtt
gttgatcggtggctacctttttttttaactgctcttgatgttgctcagatatactgcctg
agagagagattatctgctgcaattttgtacagagtgacatatccatcaagagaacttcct
gagactctatgtgcttctatgtatgcatttgcttgtatcctatcatatgactggatgaat
gggatctcattgccatgtgagtccatcgactcacttactacaatggttggttctgctgag
atcagtgagtcaccttctggaaagaaaaatgtggaggctgataagaattatctcaagtca
cttctgtgccatgatagcttgagtggcaaccacaacatgcccacttcccgtggcgcaagt
tcatctcagagttctgcaccgcagcatctcctttcagggccaggatcagcaaggccccac
aaaatgcccacttccctagatgcaagttcatctcagagttctgcacatcgatatttcctc
aggcccaggatcagcaaggcagggcattctaagaggcagcatggaaatggatcctcacag
gtagatagttga
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