Ipomoea triloba (trilobed morning glory): 116009891
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Entry
116009891 CDS
T07384
Name
(RefSeq) vacuolar sorting protein 18
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
116009891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
itr04131
]
116009891
Membrane trafficking [BR:
itr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
116009891
Hops complex
116009891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_11
zf_RING_Vps8
zf-RING_Vps41
RPN1_RPN2_N
Nup54_57_C
zf-RING_UBOX
zf-RING_2
zf-C3HC4
GST_N_2
zf-RING_5
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
116009891
NCBI-ProteinID:
XP_031104934
LinkDB
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Position
2:complement(9650357..9680669)
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AA seq
990 aa
AA seq
DB search
MESKRQVFSVDLLERYATKGRGVITCMAAGNDVIVLGTSKGWVIRHDFGVGVSDDIDLSA
GRPGEQSIHKVFVDPGGSHCIATVVGNGSADTYYMHAKWAKPRLLSKLKGLLVNAVAWNR
QQITEASTKEVILGTQSGQLYEIYVDAKDKMEKHIKLLFELKELPETFMGVQMETASVNN
GTRYYVMAVTPTRLYSFTGIGSLESVFASYVDRTVHFMELPGDIPNSELHFFIKQRRAEH
FAWLSGAGIYHGDLIFGGHHSSPSGGENFVENKALLDYSKLSEGAEVVKPSSMAVSEFHF
LLLIGNKVKIVNRISKQIVEELVFDQTPDAVSRGISGLCSDASAGLFYAYDQNSIFQVSV
NDEGRDMWKVYLDLKEYAAALASCHDHLQRDQVYFEQAESAFSSKDFQRAAYFYAKITYA
LSFEEITLKFISIGEQDALRTFLLRKLDSLAKDDKCQITMICTWATELYLDKINRLLLED
DGASETHSSEYQDIIMEFRAFLSDSKDVLDEATTMKLLESYGRVDELVFFAGLKEQYEIV
VHHYIQQGEAKKALQVLQKPNISIDLQYKFAPDLIMLDAYETVESWMTTKNLNPRKLIPA
MMRYSSEPHAMNETHEVIKYLEYCVHRLQNEDPGVHNLLLSLYAKKEDESALLRFLQCKF
GRGRPGGPEFFYDPKYALRLCLKEKRMRACVHIYSMMSMHEEAVALALQVDPELAMAEAD
KVEDDEDLRKKLWLMIAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFAL
IDDFKEAICSSLEDYNEQIEKLKQEMNDATRGADNIRNDINALAQRYAVIDRDEDCGGCG
RKILNVGGDFRMARGYTAVGPMAPFYVFPCGHAFHAQCLIAHVTRCTTPTQAEYILDLQK
QLTLLGSEPRKESNGALSEDQPIASLTPTEKIRSQLDDAIASECPYCGDLMIREISLPFI
LSEEVQEVGSWEIKPHNPGSQPQRSLSLSA
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggagtcaaagcggcaggtgttctctgtggatcttctcgaacgatatgccacaaagggg
cgtggagtgattacctgtatggctgccggaaacgatgtcatcgttttgggtactagcaaa
ggatgggtgatcagacacgattttggagtcggcgtttctgacgatattgatctttctgct
ggtagacccggggagcaatctattcataaagtttttgttgatcctggtggtagtcactgc
attgccacagttgttggcaatggaagtgctgatacatattacatgcatgcaaaatgggct
aaacctcgtcttttaagcaaactgaaagggcttcttgtcaacgctgttgcttggaaccgg
cagcaaataacagaagcttcaacaaaggaagtcattcttggcacgcagagtggccaactg
tatgagatatatgtggatgcaaaggataagatggagaagcacataaagttgctatttgaa
ctcaaggaactacctgagactttcatgggtgtgcagatggaaacagctagtgtaaacaat
ggaactagatattatgtgatggctgttactcccacacgcctatattcttttactgggatt
gggtcgctagagtctgtttttgctagttatgtggaccgcacagtacatttcatggagctt
cctggtgacatacctaacagtgaacttcacttctttataaagcaaaggagagctgagcat
tttgcctggctttctggagctggaatctaccatggtgacctaatctttggcggacatcat
agttcaccaagtgggggtgaaaactttgtggaaaacaaagctcttttggactattcaaaa
ttatcagaaggagctgaagttgttaaacctagttctatggcagtatctgaatttcatttc
cttcttcttattgggaacaaagttaagattgtaaacaggattagtaagcagattgtagaa
gaacttgtttttgatcaaacacctgatgcagtttcaaggggaatcagtgggttatgcagt
gatgcgtctgctggactgttctatgcatatgaccaaaactctatcttccaggtgtctgtt
aatgatgaaggccgagatatgtggaaggtatacttggacttaaaggaatatgctgcagca
ttggctagttgtcatgatcacctgcagagggatcaagtctattttgagcaggctgaatct
gctttttcttcaaaggatttccaacgagcagcttatttttatgcaaaaattacttatgca
ttgtcattcgaagagataacattgaagtttattagtataggtgaacaggatgctttgaga
accttccttttaaggaaacttgacagtcttgctaaggatgacaagtgtcaaataactatg
atttgtacatgggcaactgaactgtatttggacaagataaatcggctacttttagaagat
gacggtgcttcagagactcacagttcagagtatcaagatattattatggagtttcgtgct
tttctaagtgacagcaaggacgtattagatgaagcaacaactatgaagctacttgaaagc
tatggtagagttgatgaattggtcttttttgctggcctgaaggagcaatatgagattgtt
gttcatcattatattcagcaaggagaagcaaagaaagccctgcaagttcttcagaagcct
aatatctcaatagatcttcagtacaagtttgcaccagaccttatcatgcttgatgcctat
gaaactgttgagtcatggatgactactaaaaatttgaacccgagaaaactcattcctgcc
atgatgcgttattcaagtgagccacatgcaatgaatgaaacccatgaagttataaaatat
ctggagtattgtgtgcaccgactgcagaatgaagatcctggtgttcataacctgctactt
tcattatatgcaaaaaaggaggatgagagtgctctcctgcgcttcctgcaatgcaagttt
gggaggggtcggccaggtggccctgaatttttttatgaccccaaatatgccttgcgcctt
tgcctcaaggaaaagcggatgcgtgcttgtgttcatatctatagcatgatgtctatgcat
gaagaagcagttgctcttgctttacaggttgatccagagcttgctatggctgaagcagac
aaagttgaagatgatgaagacttgagaaaaaagctttggcttatgattgcaaagcatgtt
attgagcaggaaaaaggaactaagagggagaatatccgaaaggcaatagcatttctcaag
gaaactgatggattattgaagattgaagatatcttacctttctttccagactttgcttta
attgatgatttcaaagaagcaatttgctcatcattagaggactataatgagcaaattgaa
aaattgaagcaggagatgaatgatgcaacacgaggtgctgacaatattagaaatgatatt
aatgctcttgctcaacgatatgccgtcattgatcgtgatgaggattgtgggggttgcggg
cgaaaaatattaaatgtgggcggtgacttccgaatggctagaggatatacagcagttgga
ccaatggcccctttctatgtctttccatgtggacacgcctttcatgcccagtgcctgatt
gcccatgtaactaggtgcaccactccaacacaagccgaatatatactggatttgcagaag
caacttactttgctgggcagtgaacccaggaaggagtcaaatggtgccttgtctgaagat
caaccaatagctagcttgacccccactgagaagattcggtcacagctagatgatgccatc
gccagtgagtgcccatattgtggtgacttgatgatccgtgaaatctctttacctttcatc
ctgagtgaagaagtgcaagaagtaggatcatgggaaataaagccacataaccctgggagt
cagcctcagagaagcctatctttatctgcatga
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