Ipomoea triloba (trilobed morning glory): 116010032
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Entry
116010032 CDS
T07384
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03015
mRNA surveillance pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116010032
09123 Folding, sorting and degradation
03018 RNA degradation
116010032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116010032
03041 Spliceosome [BR:
itr03041
]
116010032
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
116010032
mRNA cycle factors
Stress granule specific factors
116010032
Spliceosome [BR:
itr03041
]
Complex C
Other components
Complex C specific factors
116010032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_10
RRM_5
RRM_occluded
RRM_RdRP1_2
RRM_3
Motif
Other DBs
NCBI-GeneID:
116010032
NCBI-ProteinID:
XP_031105151
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All DBs
Position
2:625307..627899
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AA seq
518 aa
AA seq
DB search
MAAVPALSLLGMSETFWRPTLYVGDLHPETTEADLEAAFSYIGPLDSFRICRDAVSGKSL
CYAFVNYFCISHASKALACLNHKTLRGKPMRIMWWQRDPVLIKSGIGNVFVKNLAPSVTS
DQLESMFSKYGTILSCKVAEENGKSKCFGFVQFETQNSAISAISSLHGAVFEGKKLYVST
FKKKEERMMDGFKEQKFNNLYVKNFDCNLTEDLLREKFSRYGKVNSAVIMRDEEGNSRGF
GFVKFDSDEDAKKAVEALNGEVIGSKRLFVGRAQKKAERERLLRSVCEEDKLALRDQKQE
ASRLYVGNLSESINERKLDELFRSFGKVVSVNVIRSNGISKGFGFVNFSSPGDAKAAMNS
LNGMVYYGKPLSVALAYPREEHSSKSLTSYAPDRPQPFFTSSHKSLYNAPPSYSLPMSVA
HFNPYQSSVHQDFGRQLSAFYLAGMHNFQGNKFTYPMKSAPSVSIPVLKCGAQKQPRTCW
EPKNKNMKGATSVTATTKEPSATSIAGIHNEKRRSLMV
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggtgcccgcgctttcgctgctggggatgtcggagactttctggcgccccact
ctgtacgtcggcgatcttcaccccgaaaccaccgaagcagacctcgaggccgcattttct
tacattggcccgcttgattccttccgaatttgcagagatgcggtttctgggaaatctctt
tgctatgctttcgtcaactacttctgtatctctcacgcttcaaaggctcttgcatgccta
aaccataaaaccctgagaggaaagccgatgaggattatgtggtggcaaagggatcctgtg
ctaataaaatctgggattgggaatgtttttgtcaagaaccttgctccttcagtgactagt
gatcaattagagagcatgtttagcaaatatgggacaatactgtcctgcaaagtggctgag
gaaaatgggaagagcaaatgttttggatttgttcagtttgaaactcagaattcagccatt
tctgctatcagttctctccatggagcagtgtttgaagggaagaaattatatgtgtccaca
tttaagaagaaagaagagaggatgatggatggctttaaagagcaaaaattcaataatctg
tatgtgaaaaactttgattgcaatctgacagaggacctcctaagagagaagttctccaga
tatgggaaggtcaattctgctgtcattatgagggatgaagaaggaaattcaagaggcttt
ggctttgtcaagtttgattcagatgaagatgccaagaaggctgttgaggctcttaatggt
gaagtaataggatcaaagaggctgtttgttggaagggcacagaagaaggcggaaagggaa
agactcttgagaagtgtatgcgaggaggacaagttagcccttcgcgatcagaagcaagag
gcttcgagactgtatgtggggaacctcagtgaatccatcaatgaaagaaagttagatgaa
ctattcagatcttttggaaaagtggtttcagtaaatgtcattcgcagtaatgggatcagc
aaaggattcgggtttgtgaacttttccagcccgggagatgccaaggcagccatgaattca
cttaatggaatggtgtattatggaaagcctctgtctgtggcgttggcgtatcccagggaa
gagcattcgagcaagtcactgacatcttatgcaccagataggccacagccatttttcact
tcttcacacaagtctctttacaacgctcccccgtcttattcgttgccaatgtcagttgca
cacttcaatccttaccagtcgtctgtgcatcaagactttggcagacagctcagtgcattc
tatcttgctggaatgcataattttcagggaaacaagttcacatatcctatgaagtctgct
cccagtgtttctatccctgtcttgaagtgtggggctcagaagcaaccaagaacctgctgg
gaaccgaaaaacaagaacatgaaaggagctacatcagtaacagccactacaaaagagcca
agtgcaacatcaatagctggaatccacaacgaaaagcgtcgctctcttatggtctga
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