Ipomoea triloba (trilobed morning glory): 116010608
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Entry
116010608 CDS
T07384
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
116010608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
itr03400
]
116010608
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
116010608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
DUF2465
Motif
Other DBs
NCBI-GeneID:
116010608
NCBI-ProteinID:
XP_031105952
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Position
2:15232060..15243502
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AA seq
939 aa
AA seq
DB search
MDDKFEEQNKLPELKLDAKQAQGFLSFFKTLPSDTRVVRFFDRRDYYTAHGNNATFIAKT
YYHTTTALRQLGSGPGAISSVSVSRNMFETIARDLLLERTDHTLELYEGSGSNWRLVKTG
TPGNLGSFEDILFANNEMQDSPVIVALVPNIRENGCVVGLGYVDLTKRMLGLTEFLDDSH
FTNVESALVALGCKECLVPVESTKSSECRALQEVMARCGVMVTERKKSEFKGRDLVQDLG
RLVKGSIEPVRDLVSGFELAPGALGSILCYAELLADENNYGNYTIRRYDLDSYMKLDSAA
MRALNVLESKSDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINCRLDLVQAF
VEDAELRQGLRQHLKRISDVERLVRNLEKKRAGLVHIVKLYQSSIRLPYIKGALERYDGQ
FASLIKERYLDHLNYWTDDNHLNKFIGLVETSIDLDQLENGEYMISAAYDSNLSSLKNEQ
ESLERQIHNLHKQTANDLDLAIDKLKLDKGPQFGHVFRITKKEEPKVRKKLNTQFIILET
RKDGVKFTNTKLKKLGDQYQKIVEEYKNCQKELVARVVQTASSFSEVFEGIAVLLSELDV
LLSFADLAANCPTPYTRPDITPPDVGDIVLEGSRHPCVEAQDWVNFIPNDCKLVRGKSWF
QIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVST
FMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVDVIKGPTLFATHF
HELTALANEYMDSDHSSNSAGIANYHVSAHIDSTNRKLTMLYKVEPGACDQSFGIHVAEF
ANFPESVVALAREKASELEDFSPASIITSDAKEATSKRKREFDSDDVSRGAARARQFLKD
FSELPLDKIDMNQALQNLKELKTNLEKDATNNPWLQQFF
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggatgacaaatttgaggaacaaaacaagcttccggagcttaaactcgatgccaagcaa
gctcaagggtttctctcattcttcaaaacgctacccagtgacactagggttgttcggttc
ttcgatcgccgagattattacacagctcatgggaacaatgcaactttcatagcaaagact
tattaccatactacaactgctttacggcagttgggtagtggacctggtgccatctctagt
gttagtgtgagtagaaacatgtttgagacaatagcccgtgaccttctcctggagagaact
gatcacactcttgagttgtatgagggtagtggctcaaattggagattagttaaaactggg
acccctgggaatcttggaagctttgaggacattctttttgcaaataatgaaatgcaagat
tctcccgtaattgtagctcttgttccaaacattcgtgaaaatggatgcgtagttgggtta
ggttatgttgatcttactaagagaatgcttggattgacagaatttcttgatgatagccac
ttcacaaatgtggaatctgctttggttgctcttggttgcaaagaatgtcttgttcctgtg
gagagtaccaaatctagtgaatgtagagctttgcaagaggtaatggcaaggtgtggtgta
atggtaactgaaagaaagaaatctgagtttaaaggaagagatttggtgcaggatcttggt
agacttgttaaaggttccatagaaccagttcgagatttagtctctgggtttgagttggca
cctggagcattgggatccatactttgttatgcagaactacttgcagatgagaataattat
ggaaactacacaattagaaggtatgaccttgacagttacatgaagttagattctgctgct
atgagggcactaaatgtcctggagagcaagtcggatgcaaacaagaactttagcttgttt
ggcctcatgaatagaacctgtacagctggaatgggtaaaagactgttgcacatgtggctg
aaacaacctttattggatgtaaatgaaattaactgtcggctggatttggtgcaagcattt
gttgaggatgctgaacttcgccaaggtctgaggcaacatttgaaacgaatttcagatgtt
gagcggttggtgcgcaatcttgagaagaagagagctggcttggtgcatattgtaaaactt
tatcagtcaagtatcagacttccatatatcaaaggtgctttggaaagatatgatgggcaa
tttgcatcattgattaaggaaaggtatttggaccatctgaactattggactgatgataat
cacctaaataagttcattggtcttgtggaaacttcaattgaccttgatcagctggagaat
ggggagtacatgatttctgctgcctatgactcaaacttatcctctttaaaaaatgagcaa
gagtcactagagcggcaaattcacaatttgcataagcaaactgccaatgatcttgattta
gctattgataaacttaagctagataaaggaccgcagtttggacatgtcttcagaattacc
aagaaggaagagcctaaagttaggaagaaactgaacacccaatttattattcttgaaaca
agaaaagatggagtgaaatttaccaatacaaaactcaagaaactcggggaccaataccaa
aagatagttgaggagtataaaaactgccaaaaagaactggtagctcgagtagttcaaact
gcttcaagtttctctgaggtatttgagggtatagctgtgctgctctctgagttggatgta
ttgctcagttttgcggatctggctgctaattgcccaactccgtacacaaggccagacatc
acccctccagatgtgggggatattgtactagaaggaagtagacatccttgtgtggaagct
caagattgggttaatttcattccaaatgattgtaagctagttaggggaaagagttggttt
cagattattactgggcccaacatgggtggaaaatctacattcatacgacaggtcggggtc
aatatcctgatggcacaagttggttcatttgttccctgtgacaaagctagcatttctgtt
cgtgactgcatttttgcccgtgtaggagctggagattgccagcttcgtggagtttcaact
tttatgcaagaaatgcttgagactgcatcaatcctgaaaggagctactgataaatcattg
attattattgatgaattaggccgtggaacatcaacttatgatggatttggcttagcttgg
gccatttgtgagcacattgttgatgtgattaaaggacctacactatttgccactcacttc
catgagctgactgcactggctaatgaatatatggatagtgatcactccagtaacagtgct
ggtatagcaaattatcatgttagtgcacacattgactctacaaatcgcaagttaactatg
ctttacaaggttgaaccaggtgcctgtgatcaaagttttgggattcatgttgcagagttt
gcgaactttccggagagtgtagttgcccttgcaagggaaaaggcatctgagttggaagat
ttctcacctgcatctattattacttctgatgctaaagaggcaacctccaagcgcaagaga
gaatttgactctgatgatgtgtctagaggggctgcccgagcccgtcagttcctgaaggat
ttctccgagttgccactagacaagatagatatgaatcaagctttgcaaaacttaaaagaa
ttgaaaacaaacttggagaaggatgcaacaaataatccttggcttcagcaattcttctaa
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