Ipomoea triloba (trilobed morning glory): 116011228
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Entry
116011228 CDS
T07384
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116011228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
itr03041
]
116011228
03009 Ribosome biogenesis [BR:
itr03009
]
116011228
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116011228
Spliceosome [BR:
itr03041
]
Complex A
U1 snRNP components
U1 related factors
116011228
Complex B
116011228
Ribosome biogenesis [BR:
itr03009
]
Eukaryotic type
Pre-60S particles
Helicases
116011228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
116011228
NCBI-ProteinID:
XP_031106625
LinkDB
All DBs
Position
2:complement(761544..765234)
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AA seq
503 aa
AA seq
DB search
MSRYDSRAADPGSYRDRRSDSGFGGGSTYRSSSASRKDYEGSESPRKLDLDGLTPFEKNF
YVESRSVAAMTDSEVEEYRRRREITVEGRDVPKPVKSFSDVGFPEYVLKEIEKAGFTEPT
PIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAQGDGPIVLVLAPTRE
LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTN
LRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNAY
KVIIGSEDLKANHAIRQHVEIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQTTRQ
LRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG
SLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKDLIHILQEAGQKVSPELAAMGRGAPP
PPPGGHGGFRDRGRGYGGGRRWN
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgagtagatacgatagccgcgcggcggaccccgggtcgtatcgcgaccggcgaagcgac
tctggctttggcggtggatcgacataccggtcatcttcagcaagtaggaaagactatgag
ggcagtgagtcgcctcggaaattggatttagacgggttgaccccgtttgagaagaatttc
tatgtcgagtcacggtcagttgcggcaatgacggacagcgaggtggaggagtataggcgg
cgacgggagataacggtagaaggccgtgatgtgccgaaacctgtgaagagcttcagtgac
gtggggtttccagaatatgttttgaaagaaattgagaaggctggctttactgagcctaca
cctattcaatctcaaggatggcctatggccttgaagggccgtgatctcattggtattgca
gaaacaggttcagggaagacactagcgtatctgctacctgcaattgtgcatgtcaatgct
caaccatttttagcgcaaggagatggtcctattgtcctagtcttagctccaactcgtgag
cttgctgttcaaatccaacaagaatctactaaatttggtgcctcatcaaagattaagagc
acttgcatatatggaggggttccaaaggggccccaagttcgtgatcttcagaaaggtgtt
gagattgttattgctacacctggaagattgattgacatgttagaatctcatcacacaaac
ttgcgtagggttacatatcttgtattggatgaagctgatcgtatgctggacatgggcttt
gaacctcagatcagaaaaattgtttcacagatacggccagatcgtcaaactctgtactgg
agtgctacatggcccaaggaagttgagcaacttgctaggcaattcctatataatgcatat
aaagtgattattggttcggaagatctgaaagctaatcatgcaattcgccagcatgtggaa
attgtctcagaaagccaaaaatataacaaattagtgaagttgttggaggacattatggat
ggtagcagaattctgatatttatggacactaaaaaaggttgtgatcaaacaactcggcaa
ttgcggatggatggttggcctgcactttcaattcatggtgataagagccaagcagaaaga
gattgggtcctctcagaattcaaagctggcaagagtcccataatgacagctacagatgtt
gctgctcgaggcttagatgtgaaggatgttaaatatgtcatcaactacgacttcccagga
tcccttgaggactatgttcatcgaattggtcggacaggaagagcaggtgccaaaggaaca
gcttacacgttcttcacagctgcaaatgccagatttgcaaaagatcttattcatattctt
caggaggctgggcagaaggtcagtcctgaactggcagccatgggacgcggtgctcctcct
cctcctccaggaggccatggcggtttccgagatcgtggccgaggttatggaggtggtcgc
cggtggaattga
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