Ipomoea triloba (trilobed morning glory): 116012762
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Entry
116012762 CDS
T07384
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116012762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116012762
03041 Spliceosome [BR:
itr03041
]
116012762
03009 Ribosome biogenesis [BR:
itr03009
]
116012762
03016 Transfer RNA biogenesis [BR:
itr03016
]
116012762
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116012762
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
116012762
Spliceosome [BR:
itr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
116012762
Complex C
U4/U6.U5 tri-SnRNP related factors
116012762
Ribosome biogenesis [BR:
itr03009
]
Eukaryotic type
Pre-60S particles
Helicases
116012762
Transfer RNA biogenesis [BR:
itr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
116012762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
116012762
NCBI-ProteinID:
XP_031108274
LinkDB
All DBs
Position
3:complement(21341689..21354651)
Genome browser
AA seq
1000 aa
AA seq
DB search
MEVKAEELSSTVAKRKSAEESSTGAEVPKEESASKRRNLTRTCVHEVAVPSGYSLCKDES
VHGTLGNPVYNGEMAKNYPFKLDPFQEVSVACLERNESVLVSAHTSAGKTAVAEYAIAMA
FRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTISPNASCLVMTTEILRGMLYR
GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWICN
LHKQPCHVVYTDFRPTPLQHYVFPMGGSGLYLVVDETEKFREDNFVKVQDAFVKQHPANG
SKGINAKSSGRIARGGNASGVSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLD
FNTEEEKDAVEQVFRNAVLCLNEEDRNLPAIELMLPLLQRGIAVHHSGLLPIIKELVELL
FQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYIGSGEYIQMSGRAGRRGKD
ERGICIIMIDEQMEMNTLKDMVLGKPAPLLSTFRLSYYTILNLMSRAEGQFTAEHVIKNS
FHQFQYEKALPDIGKKVSKLEQEAAMLDASGEAEVAEYHKLKLEISQLEKKMMAEITRPE
RVLYFLLPGRLVKVREGGKDWGWGVVVNVVKKPPTASGSLPAALSALRGSTYIVDTLLHC
SLGSSENESRPKPCLPLPGEKGEMHVVPVQLPLISALSKLRISVPPDLRPLEARQSILLA
VQELEKRFPQGLPKLNPVKDMGIEDPEFVDMMSQIEELEKKLFAHPLHKSQDEHQLKSFQ
RKAEVNHEIQQLKSKMRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTG
DELLVTELMFNGTFNDLDNHQIAALASCFIPGDRSSEQIHLRAELAKPLQQLQESARRIA
EIQHECKLEVNVEEYVEASVRPYLMDVIYCWSKGATFAEVIQMTDIFEGSIIRLARRLDE
FLNQLKAAAHAVGEVGLENKFTAASESLRRGIMFANSLYL
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgaaagcagaagaattgtcatcaacagtggctaaaaggaaatctgcagaggaa
agttcaactggtgcagaagttccaaaggaagaatcagcctcgaaaaggcgcaatttgact
cgaacatgtgtgcatgaggtggcagttccaagtgggtattccttatgtaaggacgaatct
gttcatggaactcttgggaatcctgtttataatggagagatggcaaaaaactacccattt
aagcttgacccatttcaagaagtttctgtcgcatgcttggaacggaatgagtcagttttg
gtctcagcacatacatctgctggaaagacagcagttgcagagtatgctattgcaatggca
tttagggacaaacaaagggttatatatacttcaccactgaaagcattgagcaatcaaaaa
tatagagagttgagccaagagttttctgatgttggtttaatgacaggtgatgttacaatt
tcaccaaatgcaagctgtttggtgatgaccacagagatcctaagagggatgctctatagg
ggttctgaggtgttgaaggaggttgcttgggttatatttgatgaaattcactacatgaaa
gatcgtgagagaggcgttgtttgggaagagagtatagtcttcttgccgccggctattaag
atggtttttctttctgctacgatgtcaaatgccactgagtttgctgaatggatttgtaat
ttgcataagcagccatgtcacgtggtttacaccgattttcgccctaccccattgcagcat
tatgtgtttcccatgggcggttctggattgtatcttgtagttgatgagactgagaagttt
agggaggacaattttgtgaaagtacaggatgctttcgtcaagcagcatccagcaaatgga
agcaagggtataaatgccaagtcaagtggcagaattgcaagaggtgggaatgcttctggt
gtctctgacatatacaaaattgtcaagatgattatggaacggaaatttcaaccagtcata
attttcagttttagtagaagagaatgtgaacagcatgcaatgtctatgtccaaacttgat
ttcaatactgaagaggagaaggatgctgttgaacaggtattccggaatgcagtgctctgc
ttgaatgaggaagatagaaacctacctgccattgaacttatgctgcccctgcttcaacgt
gggattgctgtgcaccattctggcctgcttcctattatcaaggaacttgtagaacttctg
ttccaagaaggacttgttaaggctctatttgccactgagacgtttgcaatgggattgaac
atgcctgcaaaaactgtagtttttactagtgtcaaaaaatgggatggtgatagtcatcgg
tacattggatctggtgagtatatccagatgagcggaagagctggacgtcgtggcaaagat
gagcgtggtatttgtatcataatgattgatgagcagatggagatgaatactctcaaggat
atggttttggggaaaccagcaccactgctcagcacatttaggcttagttactacacaatt
ttgaatttaatgagtcgtgctgaaggccaatttactgccgagcatgttatcaagaactct
tttcaccagttccagtatgagaaggccttacctgatatagggaaaaaggtttccaagcta
gaacaagaagctgctatgcttgatgcctcaggggaggctgaagtagctgaatatcataag
ctaaagcttgagatatcacaacttgaaaagaaaatgatggctgaaataacaagacccgaa
agggttctctatttcctactgcctggtagactggttaaggttcgggagggcggaaaggat
tggggttggggggtggttgtcaatgtggttaaaaagcccccaacagcatcaggttctttg
cctgctgcactttctgctttgcgtggtagtacctatatcgtggatacattactccactgt
tcccttggctccagtgaaaatgaatctcgacccaaaccatgtcttccccttcctggagaa
aagggtgaaatgcatgtggttcctgttcaactgcctctgatatctgcactcagcaaactg
agaatatctgttcctcctgatctccggccgcttgaagcaaggcaaagcatcctgcttgct
gtacaggagcttgaaaaacgttttcctcaaggcctccctaagcttaatcctgtgaaggac
atgggcatagaagatcctgaatttgttgatatgatgagccaaatagaggaactggagaaa
aagttgtttgctcaccctttgcacaagtcacaagatgagcatcagcttaagtctttccag
aggaaggctgaggttaaccatgaaattcaacagctcaagtcaaaaatgcgtgattcacag
cttcaaaaatttagggatgaacttaaaaatcgctcccgggtactgaaaaaactgggtcat
attgatgctgatggtgttgtccaattgaaaggaagagcagcatgcttaatagacacagga
gatgaactccttgttactgaactaatgtttaatggtactttcaatgatcttgacaaccat
caaattgcggctctggcaagttgcttcatcccaggggacaggtcaagtgaacagattcat
ttaagagctgaacttgctaaaccattacaacagctacaagagagtgcaagaagaatagca
gagatccaacatgaatgcaagttggaagtaaatgtggaagaatatgtggaggcttctgtt
cgaccatatttgatggatgttatttattgttggtcaaagggagcaacgtttgcagaggtt
atacaaatgactgatatctttgaagggagcataatacggctagctagaaggcttgatgaa
tttctgaaccagttgaaggctgctgcccacgcagtaggagaagttggtttggagaacaag
ttcactgcagccagtgaaagcctaagacgaggaataatgtttgcaaattctttgtacctc
tga
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